Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MSX2P35548 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.41■□□□□ 0.7
MSX2P35548 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
MSX2P35548 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSX2P35548 TNXA-203ENST00000507684 2038 ntBASIC19.41■□□□□ 0.7
MSX2P35548 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MSX2P35548 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSX2P35548 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
MSX2P35548 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
MSX2P35548 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.4■□□□□ 0.7
MSX2P35548 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC19.4■□□□□ 0.7
MSX2P35548 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSX2P35548 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.4■□□□□ 0.7
MSX2P35548 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
MSX2P35548 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSX2P35548 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
MSX2P35548 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSX2P35548 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSX2P35548 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.4■□□□□ 0.7
MSX2P35548 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.4■□□□□ 0.7
MSX2P35548 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
MSX2P35548 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
MSX2P35548 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
MSX2P35548 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
MSX2P35548 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSX2P35548 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSX2P35548 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MSX2P35548 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSX2P35548 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
MSX2P35548 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSX2P35548 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MSX2P35548 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MSX2P35548 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
MSX2P35548 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.39■□□□□ 0.69
MSX2P35548 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSX2P35548 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.39■□□□□ 0.69
MSX2P35548 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MSX2P35548 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSX2P35548 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
MSX2P35548 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MSX2P35548 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.39■□□□□ 0.69
MSX2P35548 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MSX2P35548 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.39■□□□□ 0.69
MSX2P35548 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSX2P35548 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
MSX2P35548 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSX2P35548 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSX2P35548 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSX2P35548 AC009237.3-201ENST00000393279 1427 ntBASIC19.38■□□□□ 0.69
MSX2P35548 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.38■□□□□ 0.69
MSX2P35548 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSX2P35548 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.38■□□□□ 0.69
MSX2P35548 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.38■□□□□ 0.69
MSX2P35548 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.38■□□□□ 0.69
MSX2P35548 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC19.38■□□□□ 0.69
MSX2P35548 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
MSX2P35548 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
MSX2P35548 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSX2P35548 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.38■□□□□ 0.69
MSX2P35548 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
MSX2P35548 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.38■□□□□ 0.69
MSX2P35548 AC011298.3-201ENST00000615796 283 ntBASIC19.38■□□□□ 0.69
MSX2P35548 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSX2P35548 AC120498.9-201ENST00000339021 3867 ntBASIC19.38■□□□□ 0.69
MSX2P35548 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
MSX2P35548 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSX2P35548 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSX2P35548 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.37■□□□□ 0.69
MSX2P35548 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.37■□□□□ 0.69
MSX2P35548 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSX2P35548 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSX2P35548 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSX2P35548 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.37■□□□□ 0.69
MSX2P35548 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.37■□□□□ 0.69
MSX2P35548 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.37■□□□□ 0.69
MSX2P35548 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
MSX2P35548 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
MSX2P35548 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSX2P35548 AC061975.6-201ENST00000579045 1553 ntBASIC19.37■□□□□ 0.69
MSX2P35548 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSX2P35548 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSX2P35548 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC19.37■□□□□ 0.69
MSX2P35548 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.37■□□□□ 0.69
MSX2P35548 GRAMD4P7-201ENST00000578182 1232 ntBASIC19.37■□□□□ 0.69
MSX2P35548 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
MSX2P35548 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSX2P35548 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.37■□□□□ 0.69
MSX2P35548 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSX2P35548 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSX2P35548 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSX2P35548 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.36■□□□□ 0.69
MSX2P35548 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSX2P35548 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.36■□□□□ 0.69
MSX2P35548 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSX2P35548 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.36■□□□□ 0.69
MSX2P35548 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
MSX2P35548 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
MSX2P35548 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.36■□□□□ 0.69
MSX2P35548 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSX2P35548 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms