Protein–RNA interactions for Protein: P04440

HLA-DPB1, HLA class II histocompatibility antigen, DP beta 1 chain, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPB1P04440 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DPB1P04440 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DPB1P04440 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DPB1P04440 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DPB1P04440 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
HLA-DPB1P04440 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DPB1P04440 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DPB1P04440 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DPB1P04440 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DPB1P04440 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.25■□□□□ 0.51
HLA-DPB1P04440 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DPB1P04440 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DPB1P04440 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DPB1P04440 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DPB1P04440 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.24■□□□□ 0.51
HLA-DPB1P04440 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DPB1P04440 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DPB1P04440 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DPB1P04440 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DPB1P04440 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DPB1P04440 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DPB1P04440 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC18.24■□□□□ 0.51
HLA-DPB1P04440 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DPB1P04440 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DPB1P04440 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
HLA-DPB1P04440 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
HLA-DPB1P04440 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.24■□□□□ 0.51
HLA-DPB1P04440 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DPB1P04440 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DPB1P04440 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
HLA-DPB1P04440 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 AC009237.3-201ENST00000393279 1427 ntBASIC18.23■□□□□ 0.51
HLA-DPB1P04440 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DPB1P04440 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 AC005224.4-201ENST00000583262 1652 ntBASIC18.22■□□□□ 0.51
HLA-DPB1P04440 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DPB1P04440 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DPB1P04440 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DPB1P04440 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
HLA-DPB1P04440 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DPB1P04440 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DPB1P04440 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DPB1P04440 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DPB1P04440 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.21■□□□□ 0.51
HLA-DPB1P04440 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DPB1P04440 AK1-201ENST00000223836 736 ntTSL 3 BASIC18.21■□□□□ 0.51
HLA-DPB1P04440 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC18.21■□□□□ 0.51
HLA-DPB1P04440 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DPB1P04440 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC18.21■□□□□ 0.51
HLA-DPB1P04440 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC18.21■□□□□ 0.51
HLA-DPB1P04440 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DPB1P04440 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.21■□□□□ 0.51
HLA-DPB1P04440 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.21■□□□□ 0.51
HLA-DPB1P04440 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.21■□□□□ 0.51
HLA-DPB1P04440 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
HLA-DPB1P04440 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DPB1P04440 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DPB1P04440 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms