Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC24.41■■□□□ 1.5
SMC1BQ8NDV3 AC116562.2-201ENST00000507042 360 ntBASIC24.41■■□□□ 1.5
SMC1BQ8NDV3 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC24.41■■□□□ 1.5
SMC1BQ8NDV3 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC24.41■■□□□ 1.5
SMC1BQ8NDV3 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
SMC1BQ8NDV3 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC24.41■■□□□ 1.5
SMC1BQ8NDV3 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC24.41■■□□□ 1.5
SMC1BQ8NDV3 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC24.41■■□□□ 1.5
SMC1BQ8NDV3 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
SMC1BQ8NDV3 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SMC1BQ8NDV3 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC24.41■■□□□ 1.5
SMC1BQ8NDV3 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC24.4■■□□□ 1.5
SMC1BQ8NDV3 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
SMC1BQ8NDV3 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC24.4■■□□□ 1.5
SMC1BQ8NDV3 AC004812.2-201ENST00000611079 2094 ntBASIC24.4■■□□□ 1.5
SMC1BQ8NDV3 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SMC1BQ8NDV3 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SMC1BQ8NDV3 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SMC1BQ8NDV3 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SMC1BQ8NDV3 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SMC1BQ8NDV3 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC24.4■■□□□ 1.5
SMC1BQ8NDV3 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC24.4■■□□□ 1.5
SMC1BQ8NDV3 DBP-204ENST00000599385 709 ntTSL 3 BASIC24.4■■□□□ 1.5
SMC1BQ8NDV3 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
SMC1BQ8NDV3 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.5
SMC1BQ8NDV3 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
SMC1BQ8NDV3 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC24.39■■□□□ 1.5
SMC1BQ8NDV3 AC093323.1-202ENST00000635031 2045 ntBASIC24.39■■□□□ 1.5
SMC1BQ8NDV3 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.5
SMC1BQ8NDV3 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
SMC1BQ8NDV3 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
SMC1BQ8NDV3 CLN6-204ENST00000564752 900 ntTSL 3 BASIC24.39■■□□□ 1.49
SMC1BQ8NDV3 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC24.39■■□□□ 1.49
SMC1BQ8NDV3 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
SMC1BQ8NDV3 MYC-208ENST00000641036 567 ntBASIC24.39■■□□□ 1.49
SMC1BQ8NDV3 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
SMC1BQ8NDV3 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC24.38■■□□□ 1.49
SMC1BQ8NDV3 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC24.38■■□□□ 1.49
SMC1BQ8NDV3 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
SMC1BQ8NDV3 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
SMC1BQ8NDV3 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
SMC1BQ8NDV3 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
SMC1BQ8NDV3 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
SMC1BQ8NDV3 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC24.38■■□□□ 1.49
SMC1BQ8NDV3 BX664615.1-201ENST00000443558 458 ntBASIC24.38■■□□□ 1.49
SMC1BQ8NDV3 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC24.38■■□□□ 1.49
SMC1BQ8NDV3 MED17-227ENST00000640521 2047 ntTSL 5 BASIC24.38■■□□□ 1.49
SMC1BQ8NDV3 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
SMC1BQ8NDV3 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
SMC1BQ8NDV3 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC24.37■■□□□ 1.49
SMC1BQ8NDV3 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SMC1BQ8NDV3 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
SMC1BQ8NDV3 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC24.37■■□□□ 1.49
SMC1BQ8NDV3 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
SMC1BQ8NDV3 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC24.37■■□□□ 1.49
SMC1BQ8NDV3 AL031133.1-201ENST00000406807 723 ntBASIC24.37■■□□□ 1.49
SMC1BQ8NDV3 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC24.37■■□□□ 1.49
SMC1BQ8NDV3 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC24.37■■□□□ 1.49
SMC1BQ8NDV3 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
SMC1BQ8NDV3 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
SMC1BQ8NDV3 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC24.37■■□□□ 1.49
SMC1BQ8NDV3 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
SMC1BQ8NDV3 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC24.36■■□□□ 1.49
SMC1BQ8NDV3 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
SMC1BQ8NDV3 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
SMC1BQ8NDV3 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
SMC1BQ8NDV3 COPS8-203ENST00000409334 794 ntTSL 5 BASIC24.36■■□□□ 1.49
SMC1BQ8NDV3 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC24.36■■□□□ 1.49
SMC1BQ8NDV3 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
SMC1BQ8NDV3 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC24.36■■□□□ 1.49
SMC1BQ8NDV3 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
SMC1BQ8NDV3 AC003102.1-202ENST00000563394 1796 ntBASIC24.36■■□□□ 1.49
SMC1BQ8NDV3 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC24.36■■□□□ 1.49
SMC1BQ8NDV3 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
SMC1BQ8NDV3 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
SMC1BQ8NDV3 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC24.35■■□□□ 1.49
SMC1BQ8NDV3 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SMC1BQ8NDV3 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC24.35■■□□□ 1.49
SMC1BQ8NDV3 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SMC1BQ8NDV3 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
SMC1BQ8NDV3 SAPCD2P2-201ENST00000431719 1174 ntBASIC24.35■■□□□ 1.49
SMC1BQ8NDV3 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC24.35■■□□□ 1.49
SMC1BQ8NDV3 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SMC1BQ8NDV3 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
SMC1BQ8NDV3 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SMC1BQ8NDV3 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SMC1BQ8NDV3 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SMC1BQ8NDV3 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
SMC1BQ8NDV3 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
SMC1BQ8NDV3 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SMC1BQ8NDV3 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC24.34■■□□□ 1.49
SMC1BQ8NDV3 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
SMC1BQ8NDV3 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
SMC1BQ8NDV3 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC24.34■■□□□ 1.49
SMC1BQ8NDV3 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
SMC1BQ8NDV3 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC24.34■■□□□ 1.49
SMC1BQ8NDV3 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC24.34■■□□□ 1.49
SMC1BQ8NDV3 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC24.34■■□□□ 1.49
SMC1BQ8NDV3 AL691432.3-201ENST00000621860 400 ntBASIC24.34■■□□□ 1.49
SMC1BQ8NDV3 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms