Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 AC126544.1-201ENST00000580842 1059 ntBASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ZNF540Q8NDQ6 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
ZNF540Q8NDQ6 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC18.83■□□□□ 0.61
ZNF540Q8NDQ6 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ZNF540Q8NDQ6 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ZNF540Q8NDQ6 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ZNF540Q8NDQ6 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.83■□□□□ 0.61
ZNF540Q8NDQ6 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.83■□□□□ 0.61
ZNF540Q8NDQ6 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
ZNF540Q8NDQ6 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.83■□□□□ 0.6
ZNF540Q8NDQ6 AICDA-202ENST00000537228 667 ntTSL 5 BASIC18.83■□□□□ 0.6
ZNF540Q8NDQ6 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.6
ZNF540Q8NDQ6 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.83■□□□□ 0.6
ZNF540Q8NDQ6 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
ZNF540Q8NDQ6 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ZNF540Q8NDQ6 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 AK1-201ENST00000223836 736 ntTSL 3 BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 RHOF-204ENST00000537265 699 ntTSL 2 BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 BX323043.1-201ENST00000641006 1765 ntBASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 AC116562.4-201ENST00000641316 2276 ntBASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 AC098818.2-201ENST00000564925 2320 ntBASIC18.82■□□□□ 0.6
ZNF540Q8NDQ6 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 SNX3-202ENST00000349379 890 ntTSL 2 BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZNF540Q8NDQ6 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
ZNF540Q8NDQ6 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ZNF540Q8NDQ6 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.8■□□□□ 0.6
ZNF540Q8NDQ6 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
ZNF540Q8NDQ6 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ZNF540Q8NDQ6 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ZNF540Q8NDQ6 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
ZNF540Q8NDQ6 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
ZNF540Q8NDQ6 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.8■□□□□ 0.6
ZNF540Q8NDQ6 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ZNF540Q8NDQ6 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms