Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 RNF146-205ENST00000477776 762 ntTSL 3 BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 SNX5-217ENST00000606557 1087 ntBASIC15.34■□□□□ 0.05
HLA-DQA1P01909 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HLA-DQA1P01909 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HLA-DQA1P01909 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC15.33■□□□□ 0.05
HLA-DQA1P01909 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC15.33■□□□□ 0.05
HLA-DQA1P01909 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
HLA-DQA1P01909 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HLA-DQA1P01909 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
HLA-DQA1P01909 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HLA-DQA1P01909 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HLA-DQA1P01909 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HLA-DQA1P01909 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
HLA-DQA1P01909 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
HLA-DQA1P01909 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HLA-DQA1P01909 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HLA-DQA1P01909 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
HLA-DQA1P01909 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC15.33■□□□□ 0.04
HLA-DQA1P01909 AL034346.1-201ENST00000568244 1277 ntBASIC15.33■□□□□ 0.04
HLA-DQA1P01909 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC15.33■□□□□ 0.04
HLA-DQA1P01909 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
HLA-DQA1P01909 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC15.33■□□□□ 0.04
HLA-DQA1P01909 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC15.33■□□□□ 0.04
HLA-DQA1P01909 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC15.33■□□□□ 0.04
HLA-DQA1P01909 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HLA-DQA1P01909 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC15.33■□□□□ 0.04
HLA-DQA1P01909 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
HLA-DQA1P01909 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HLA-DQA1P01909 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
HLA-DQA1P01909 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC15.32■□□□□ 0.04
HLA-DQA1P01909 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQA1P01909 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQA1P01909 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQA1P01909 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC15.31■□□□□ 0.04
HLA-DQA1P01909 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQA1P01909 AC125437.2-201ENST00000625180 2167 ntBASIC15.31■□□□□ 0.04
HLA-DQA1P01909 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQA1P01909 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQA1P01909 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC15.31■□□□□ 0.04
HLA-DQA1P01909 KRT125P-201ENST00000546827 989 ntBASIC15.31■□□□□ 0.04
HLA-DQA1P01909 PRTG-204ENST00000561292 833 ntTSL 3 BASIC15.31■□□□□ 0.04
HLA-DQA1P01909 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC15.31■□□□□ 0.04
HLA-DQA1P01909 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQA1P01909 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQA1P01909 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQA1P01909 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC15.31■□□□□ 0.04
HLA-DQA1P01909 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQA1P01909 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
HLA-DQA1P01909 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
HLA-DQA1P01909 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQA1P01909 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQA1P01909 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQA1P01909 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQA1P01909 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms