Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.11■□□□□ 0.81
SNX3O60493 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SNX3O60493 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SNX3O60493 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SNX3O60493 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.11■□□□□ 0.81
SNX3O60493 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
SNX3O60493 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SNX3O60493 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.11■□□□□ 0.81
SNX3O60493 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SNX3O60493 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SNX3O60493 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.11■□□□□ 0.81
SNX3O60493 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.11■□□□□ 0.81
SNX3O60493 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SNX3O60493 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.11■□□□□ 0.81
SNX3O60493 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SNX3O60493 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SNX3O60493 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SNX3O60493 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SNX3O60493 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SNX3O60493 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.1■□□□□ 0.81
SNX3O60493 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SNX3O60493 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SNX3O60493 AC005082.1-201ENST00000413042 2259 ntBASIC20.1■□□□□ 0.81
SNX3O60493 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SNX3O60493 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SNX3O60493 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.1■□□□□ 0.81
SNX3O60493 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SNX3O60493 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SNX3O60493 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SNX3O60493 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SNX3O60493 TREX1-205ENST00000625293 1783 ntBASIC20.1■□□□□ 0.81
SNX3O60493 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SNX3O60493 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SNX3O60493 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SNX3O60493 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SNX3O60493 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SNX3O60493 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.1■□□□□ 0.81
SNX3O60493 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SNX3O60493 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SNX3O60493 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SNX3O60493 Z82202.1-201ENST00000623446 1880 ntBASIC20.09■□□□□ 0.81
SNX3O60493 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.09■□□□□ 0.81
SNX3O60493 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
SNX3O60493 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.09■□□□□ 0.81
SNX3O60493 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SNX3O60493 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.09■□□□□ 0.81
SNX3O60493 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.09■□□□□ 0.81
SNX3O60493 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.09■□□□□ 0.81
SNX3O60493 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
SNX3O60493 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SNX3O60493 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
SNX3O60493 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.09■□□□□ 0.81
SNX3O60493 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SNX3O60493 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SNX3O60493 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
SNX3O60493 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SNX3O60493 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
SNX3O60493 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SNX3O60493 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SNX3O60493 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
SNX3O60493 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SNX3O60493 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SNX3O60493 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.08■□□□□ 0.81
SNX3O60493 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SNX3O60493 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.08■□□□□ 0.81
SNX3O60493 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
SNX3O60493 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SNX3O60493 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.08■□□□□ 0.81
SNX3O60493 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SNX3O60493 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SNX3O60493 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SNX3O60493 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SNX3O60493 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.08■□□□□ 0.8
SNX3O60493 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.08■□□□□ 0.8
SNX3O60493 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SNX3O60493 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.08■□□□□ 0.8
SNX3O60493 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SNX3O60493 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.07■□□□□ 0.8
SNX3O60493 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.07■□□□□ 0.8
SNX3O60493 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SNX3O60493 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SNX3O60493 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SNX3O60493 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SNX3O60493 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SNX3O60493 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.07■□□□□ 0.8
SNX3O60493 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SNX3O60493 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.07■□□□□ 0.8
SNX3O60493 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SNX3O60493 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SNX3O60493 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.07■□□□□ 0.8
SNX3O60493 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
SNX3O60493 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SNX3O60493 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SNX3O60493 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SNX3O60493 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SNX3O60493 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SNX3O60493 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SNX3O60493 AC055733.4-201ENST00000638462 1354 ntBASIC20.07■□□□□ 0.8
SNX3O60493 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SNX3O60493 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms