Protein–RNA interactions for Protein: Q9Y4C1

KDM3A, Lysine-specific demethylase 3A, humanhuman

Predictions only

Length 1,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3AQ9Y4C1 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC29.72■■■□□ 2.35
KDM3AQ9Y4C1 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC29.72■■■□□ 2.35
KDM3AQ9Y4C1 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC29.71■■■□□ 2.35
KDM3AQ9Y4C1 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC29.7■■■□□ 2.34
KDM3AQ9Y4C1 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC29.69■■■□□ 2.34
KDM3AQ9Y4C1 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC29.69■■■□□ 2.34
KDM3AQ9Y4C1 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC29.69■■■□□ 2.34
KDM3AQ9Y4C1 ST7-AS1-201ENST00000456775 1889 ntBASIC29.67■■■□□ 2.34
KDM3AQ9Y4C1 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
KDM3AQ9Y4C1 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC29.67■■■□□ 2.34
KDM3AQ9Y4C1 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
KDM3AQ9Y4C1 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC29.66■■■□□ 2.34
KDM3AQ9Y4C1 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC29.66■■■□□ 2.34
KDM3AQ9Y4C1 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC29.66■■■□□ 2.34
KDM3AQ9Y4C1 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC29.66■■■□□ 2.34
KDM3AQ9Y4C1 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
KDM3AQ9Y4C1 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC29.66■■■□□ 2.34
KDM3AQ9Y4C1 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
KDM3AQ9Y4C1 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC29.65■■■□□ 2.34
KDM3AQ9Y4C1 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC29.64■■■□□ 2.34
KDM3AQ9Y4C1 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
KDM3AQ9Y4C1 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
KDM3AQ9Y4C1 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.34
KDM3AQ9Y4C1 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
KDM3AQ9Y4C1 ABCB10P1-201ENST00000614297 2181 ntBASIC29.63■■■□□ 2.33
KDM3AQ9Y4C1 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
KDM3AQ9Y4C1 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
KDM3AQ9Y4C1 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC29.63■■■□□ 2.33
KDM3AQ9Y4C1 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC29.63■■■□□ 2.33
KDM3AQ9Y4C1 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC29.62■■■□□ 2.33
KDM3AQ9Y4C1 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
KDM3AQ9Y4C1 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC29.62■■■□□ 2.33
KDM3AQ9Y4C1 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
KDM3AQ9Y4C1 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC29.61■■■□□ 2.33
KDM3AQ9Y4C1 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC29.61■■■□□ 2.33
KDM3AQ9Y4C1 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
KDM3AQ9Y4C1 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
KDM3AQ9Y4C1 AC010864.1-201ENST00000609407 1511 ntBASIC29.6■■■□□ 2.33
KDM3AQ9Y4C1 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
KDM3AQ9Y4C1 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC29.59■■■□□ 2.33
KDM3AQ9Y4C1 HGH1-207ENST00000628266 258 ntTSL 5 BASIC29.58■■■□□ 2.33
KDM3AQ9Y4C1 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
KDM3AQ9Y4C1 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC29.58■■■□□ 2.33
KDM3AQ9Y4C1 ZNRF2P2-203ENST00000454624 420 ntBASIC29.57■■■□□ 2.32
KDM3AQ9Y4C1 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC29.57■■■□□ 2.32
KDM3AQ9Y4C1 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
KDM3AQ9Y4C1 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC29.57■■■□□ 2.32
KDM3AQ9Y4C1 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
KDM3AQ9Y4C1 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC29.56■■■□□ 2.32
KDM3AQ9Y4C1 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
KDM3AQ9Y4C1 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC29.56■■■□□ 2.32
KDM3AQ9Y4C1 PVT1-219ENST00000523427 938 ntTSL 3 BASIC29.54■■■□□ 2.32
KDM3AQ9Y4C1 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC29.54■■■□□ 2.32
KDM3AQ9Y4C1 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
KDM3AQ9Y4C1 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
KDM3AQ9Y4C1 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
KDM3AQ9Y4C1 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
KDM3AQ9Y4C1 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC29.52■■■□□ 2.32
KDM3AQ9Y4C1 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
KDM3AQ9Y4C1 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
KDM3AQ9Y4C1 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC29.52■■■□□ 2.32
KDM3AQ9Y4C1 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC29.51■■■□□ 2.32
KDM3AQ9Y4C1 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
KDM3AQ9Y4C1 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
KDM3AQ9Y4C1 DUX4L29-201ENST00000425409 679 ntBASIC29.49■■■□□ 2.31
KDM3AQ9Y4C1 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
KDM3AQ9Y4C1 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC29.49■■■□□ 2.31
KDM3AQ9Y4C1 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC29.49■■■□□ 2.31
KDM3AQ9Y4C1 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC29.49■■■□□ 2.31
KDM3AQ9Y4C1 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC29.48■■■□□ 2.31
KDM3AQ9Y4C1 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC29.48■■■□□ 2.31
KDM3AQ9Y4C1 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
KDM3AQ9Y4C1 AC108673.1-201ENST00000510422 1159 ntBASIC29.46■■■□□ 2.31
KDM3AQ9Y4C1 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
KDM3AQ9Y4C1 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
KDM3AQ9Y4C1 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC29.45■■■□□ 2.3
KDM3AQ9Y4C1 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC29.44■■■□□ 2.3
KDM3AQ9Y4C1 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
KDM3AQ9Y4C1 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
KDM3AQ9Y4C1 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
KDM3AQ9Y4C1 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
KDM3AQ9Y4C1 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
KDM3AQ9Y4C1 AC021231.2-201ENST00000594613 730 ntBASIC29.42■■■□□ 2.3
KDM3AQ9Y4C1 MIR6090-201ENST00000622481 60 ntBASIC29.42■■■□□ 2.3
KDM3AQ9Y4C1 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
KDM3AQ9Y4C1 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
KDM3AQ9Y4C1 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
KDM3AQ9Y4C1 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC29.4■■■□□ 2.3
KDM3AQ9Y4C1 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
KDM3AQ9Y4C1 CIB2-204ENST00000557846 934 ntTSL 3 BASIC29.4■■■□□ 2.3
KDM3AQ9Y4C1 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
KDM3AQ9Y4C1 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC29.4■■■□□ 2.3
KDM3AQ9Y4C1 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
KDM3AQ9Y4C1 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC29.37■■■□□ 2.29
KDM3AQ9Y4C1 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
KDM3AQ9Y4C1 HLA-V-202ENST00000446817 847 ntBASIC29.37■■■□□ 2.29
KDM3AQ9Y4C1 MBP-237ENST00000579129 1052 ntTSL 5 BASIC29.37■■■□□ 2.29
KDM3AQ9Y4C1 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC29.37■■■□□ 2.29
KDM3AQ9Y4C1 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
KDM3AQ9Y4C1 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC29.36■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms