Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
FOXA2Q9Y261 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
FOXA2Q9Y261 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC21.19■□□□□ 0.98
FOXA2Q9Y261 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
FOXA2Q9Y261 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
FOXA2Q9Y261 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
FOXA2Q9Y261 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
FOXA2Q9Y261 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXA2Q9Y261 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXA2Q9Y261 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.17■□□□□ 0.98
FOXA2Q9Y261 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXA2Q9Y261 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
FOXA2Q9Y261 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
FOXA2Q9Y261 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXA2Q9Y261 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
FOXA2Q9Y261 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXA2Q9Y261 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC21.15■□□□□ 0.98
FOXA2Q9Y261 SUZ12P1-203ENST00000578195 985 ntBASIC21.15■□□□□ 0.98
FOXA2Q9Y261 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
FOXA2Q9Y261 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
FOXA2Q9Y261 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
FOXA2Q9Y261 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
FOXA2Q9Y261 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
FOXA2Q9Y261 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXA2Q9Y261 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXA2Q9Y261 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXA2Q9Y261 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXA2Q9Y261 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXA2Q9Y261 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXA2Q9Y261 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC21.09■□□□□ 0.97
FOXA2Q9Y261 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXA2Q9Y261 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC21.09■□□□□ 0.97
FOXA2Q9Y261 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
FOXA2Q9Y261 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXA2Q9Y261 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
FOXA2Q9Y261 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXA2Q9Y261 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FOXA2Q9Y261 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
FOXA2Q9Y261 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.96
FOXA2Q9Y261 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
FOXA2Q9Y261 DENR-202ENST00000455982 1052 ntTSL 5 BASIC21.07■□□□□ 0.96
FOXA2Q9Y261 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
FOXA2Q9Y261 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.07■□□□□ 0.96
FOXA2Q9Y261 AC142086.6-201ENST00000621154 1765 ntBASIC21.07■□□□□ 0.96
FOXA2Q9Y261 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.07■□□□□ 0.96
FOXA2Q9Y261 AL139393.2-201ENST00000608721 2025 ntBASIC21.07■□□□□ 0.96
FOXA2Q9Y261 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
FOXA2Q9Y261 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC21.06■□□□□ 0.96
FOXA2Q9Y261 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
FOXA2Q9Y261 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
FOXA2Q9Y261 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
FOXA2Q9Y261 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
FOXA2Q9Y261 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
FOXA2Q9Y261 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXA2Q9Y261 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXA2Q9Y261 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.04■□□□□ 0.96
FOXA2Q9Y261 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXA2Q9Y261 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
FOXA2Q9Y261 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
FOXA2Q9Y261 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
FOXA2Q9Y261 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
FOXA2Q9Y261 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
FOXA2Q9Y261 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC21.02■□□□□ 0.96
FOXA2Q9Y261 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
FOXA2Q9Y261 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
FOXA2Q9Y261 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
FOXA2Q9Y261 AC010864.1-201ENST00000609407 1511 ntBASIC21.02■□□□□ 0.96
FOXA2Q9Y261 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
FOXA2Q9Y261 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
FOXA2Q9Y261 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC21■□□□□ 0.95
FOXA2Q9Y261 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
FOXA2Q9Y261 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC21■□□□□ 0.95
FOXA2Q9Y261 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
FOXA2Q9Y261 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC21■□□□□ 0.95
FOXA2Q9Y261 HNRNPLP2-201ENST00000568980 1570 ntBASIC20.99■□□□□ 0.95
FOXA2Q9Y261 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
FOXA2Q9Y261 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
FOXA2Q9Y261 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
FOXA2Q9Y261 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
FOXA2Q9Y261 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
FOXA2Q9Y261 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
FOXA2Q9Y261 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC20.98■□□□□ 0.95
FOXA2Q9Y261 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC20.97■□□□□ 0.95
FOXA2Q9Y261 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC20.97■□□□□ 0.95
FOXA2Q9Y261 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
FOXA2Q9Y261 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXA2Q9Y261 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC20.96■□□□□ 0.95
FOXA2Q9Y261 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
FOXA2Q9Y261 MIR762-201ENST00000390236 83 ntBASIC20.96■□□□□ 0.95
FOXA2Q9Y261 CHML-205ENST00000638160 705 ntTSL 3 BASIC20.96■□□□□ 0.95
FOXA2Q9Y261 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
FOXA2Q9Y261 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
FOXA2Q9Y261 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
FOXA2Q9Y261 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
FOXA2Q9Y261 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
FOXA2Q9Y261 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC20.94■□□□□ 0.94
FOXA2Q9Y261 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC20.93■□□□□ 0.94
FOXA2Q9Y261 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
FOXA2Q9Y261 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC20.93■□□□□ 0.94
FOXA2Q9Y261 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms