Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
DEPDC4Q8N2C3 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
DEPDC4Q8N2C3 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.46
DEPDC4Q8N2C3 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
DEPDC4Q8N2C3 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
DEPDC4Q8N2C3 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC24.19■■□□□ 1.46
DEPDC4Q8N2C3 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
DEPDC4Q8N2C3 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC24.17■■□□□ 1.46
DEPDC4Q8N2C3 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC24.17■■□□□ 1.46
DEPDC4Q8N2C3 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
DEPDC4Q8N2C3 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
DEPDC4Q8N2C3 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
DEPDC4Q8N2C3 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
DEPDC4Q8N2C3 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC24.15■■□□□ 1.46
DEPDC4Q8N2C3 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
DEPDC4Q8N2C3 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC24.15■■□□□ 1.46
DEPDC4Q8N2C3 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
DEPDC4Q8N2C3 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC24.14■■□□□ 1.46
DEPDC4Q8N2C3 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
DEPDC4Q8N2C3 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC24.14■■□□□ 1.45
DEPDC4Q8N2C3 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.45
DEPDC4Q8N2C3 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC24.13■■□□□ 1.45
DEPDC4Q8N2C3 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC24.13■■□□□ 1.45
DEPDC4Q8N2C3 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
DEPDC4Q8N2C3 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC24.13■■□□□ 1.45
DEPDC4Q8N2C3 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
DEPDC4Q8N2C3 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC24.12■■□□□ 1.45
DEPDC4Q8N2C3 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
DEPDC4Q8N2C3 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
DEPDC4Q8N2C3 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
DEPDC4Q8N2C3 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
DEPDC4Q8N2C3 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
DEPDC4Q8N2C3 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC24.1■■□□□ 1.45
DEPDC4Q8N2C3 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
DEPDC4Q8N2C3 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
DEPDC4Q8N2C3 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
DEPDC4Q8N2C3 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
DEPDC4Q8N2C3 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
DEPDC4Q8N2C3 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.44
DEPDC4Q8N2C3 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC24.08■■□□□ 1.44
DEPDC4Q8N2C3 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
DEPDC4Q8N2C3 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
DEPDC4Q8N2C3 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
DEPDC4Q8N2C3 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
DEPDC4Q8N2C3 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
DEPDC4Q8N2C3 AC136428.2-201ENST00000563187 214 ntBASIC24.05■■□□□ 1.44
DEPDC4Q8N2C3 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
DEPDC4Q8N2C3 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
DEPDC4Q8N2C3 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
DEPDC4Q8N2C3 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
DEPDC4Q8N2C3 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC24.03■■□□□ 1.44
DEPDC4Q8N2C3 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC24.02■■□□□ 1.44
DEPDC4Q8N2C3 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC24.01■■□□□ 1.43
DEPDC4Q8N2C3 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC24■■□□□ 1.43
DEPDC4Q8N2C3 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
DEPDC4Q8N2C3 AL139393.2-201ENST00000608721 2025 ntBASIC23.99■■□□□ 1.43
DEPDC4Q8N2C3 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
DEPDC4Q8N2C3 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
DEPDC4Q8N2C3 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
DEPDC4Q8N2C3 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
DEPDC4Q8N2C3 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
DEPDC4Q8N2C3 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC23.97■■□□□ 1.43
DEPDC4Q8N2C3 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC23.97■■□□□ 1.43
DEPDC4Q8N2C3 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
DEPDC4Q8N2C3 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC23.96■■□□□ 1.43
DEPDC4Q8N2C3 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC23.96■■□□□ 1.43
DEPDC4Q8N2C3 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
DEPDC4Q8N2C3 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC23.95■■□□□ 1.43
DEPDC4Q8N2C3 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
DEPDC4Q8N2C3 DRD5P2-201ENST00000421395 2012 ntBASIC23.95■■□□□ 1.42
DEPDC4Q8N2C3 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
DEPDC4Q8N2C3 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
DEPDC4Q8N2C3 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
DEPDC4Q8N2C3 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC23.94■■□□□ 1.42
DEPDC4Q8N2C3 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
DEPDC4Q8N2C3 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
DEPDC4Q8N2C3 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC23.93■■□□□ 1.42
DEPDC4Q8N2C3 AL133380.1-201ENST00000506013 324 ntBASIC23.93■■□□□ 1.42
DEPDC4Q8N2C3 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
DEPDC4Q8N2C3 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
DEPDC4Q8N2C3 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
DEPDC4Q8N2C3 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC23.92■■□□□ 1.42
DEPDC4Q8N2C3 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
DEPDC4Q8N2C3 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
DEPDC4Q8N2C3 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
DEPDC4Q8N2C3 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
DEPDC4Q8N2C3 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
DEPDC4Q8N2C3 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
DEPDC4Q8N2C3 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
DEPDC4Q8N2C3 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.42
DEPDC4Q8N2C3 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.41
DEPDC4Q8N2C3 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
DEPDC4Q8N2C3 AL121749.1-202ENST00000609313 2153 ntBASIC23.89■■□□□ 1.41
DEPDC4Q8N2C3 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
DEPDC4Q8N2C3 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
DEPDC4Q8N2C3 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
DEPDC4Q8N2C3 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
DEPDC4Q8N2C3 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
DEPDC4Q8N2C3 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
DEPDC4Q8N2C3 SUZ12P1-203ENST00000578195 985 ntBASIC23.86■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms