Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AC010864.1-201ENST00000609407 1511 ntBASIC23.4■■□□□ 1.34
CLRN1P58418 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CLRN1P58418 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC23.4■■□□□ 1.34
CLRN1P58418 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CLRN1P58418 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC23.4■■□□□ 1.34
CLRN1P58418 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
CLRN1P58418 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.33
CLRN1P58418 MIR762-201ENST00000390236 83 ntBASIC23.38■■□□□ 1.33
CLRN1P58418 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC23.38■■□□□ 1.33
CLRN1P58418 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC23.37■■□□□ 1.33
CLRN1P58418 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
CLRN1P58418 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CLRN1P58418 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC23.36■■□□□ 1.33
CLRN1P58418 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CLRN1P58418 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CLRN1P58418 CHML-205ENST00000638160 705 ntTSL 3 BASIC23.35■■□□□ 1.33
CLRN1P58418 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CLRN1P58418 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
CLRN1P58418 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC23.34■■□□□ 1.33
CLRN1P58418 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CLRN1P58418 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
CLRN1P58418 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CLRN1P58418 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CLRN1P58418 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
CLRN1P58418 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CLRN1P58418 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CLRN1P58418 HNRNPLP2-201ENST00000568980 1570 ntBASIC23.31■■□□□ 1.32
CLRN1P58418 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC23.31■■□□□ 1.32
CLRN1P58418 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CLRN1P58418 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CLRN1P58418 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CLRN1P58418 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC23.3■■□□□ 1.32
CLRN1P58418 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CLRN1P58418 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CLRN1P58418 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CLRN1P58418 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CLRN1P58418 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC23.29■■□□□ 1.32
CLRN1P58418 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CLRN1P58418 RPS2-209ENST00000529806 993 ntTSL 3 BASIC23.29■■□□□ 1.32
CLRN1P58418 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CLRN1P58418 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
CLRN1P58418 AC139426.1-201ENST00000568218 2529 ntBASIC23.28■■□□□ 1.32
CLRN1P58418 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CLRN1P58418 AC005559.1-201ENST00000589661 871 ntBASIC23.28■■□□□ 1.32
CLRN1P58418 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CLRN1P58418 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CLRN1P58418 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CLRN1P58418 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
CLRN1P58418 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CLRN1P58418 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
CLRN1P58418 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
CLRN1P58418 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
CLRN1P58418 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CLRN1P58418 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CLRN1P58418 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
CLRN1P58418 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CLRN1P58418 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CLRN1P58418 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
CLRN1P58418 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.24■■□□□ 1.31
CLRN1P58418 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
CLRN1P58418 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CLRN1P58418 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC23.23■■□□□ 1.31
CLRN1P58418 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CLRN1P58418 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC23.23■■□□□ 1.31
CLRN1P58418 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC23.23■■□□□ 1.31
CLRN1P58418 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CLRN1P58418 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC23.22■■□□□ 1.31
CLRN1P58418 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CLRN1P58418 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CLRN1P58418 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CLRN1P58418 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
CLRN1P58418 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CLRN1P58418 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
CLRN1P58418 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CLRN1P58418 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
CLRN1P58418 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC23.2■■□□□ 1.3
CLRN1P58418 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
CLRN1P58418 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CLRN1P58418 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC23.19■■□□□ 1.3
CLRN1P58418 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CLRN1P58418 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC23.19■■□□□ 1.3
CLRN1P58418 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CLRN1P58418 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CLRN1P58418 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CLRN1P58418 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CLRN1P58418 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CLRN1P58418 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLRN1P58418 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLRN1P58418 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC23.16■■□□□ 1.3
CLRN1P58418 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
CLRN1P58418 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CLRN1P58418 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC23.15■■□□□ 1.3
CLRN1P58418 MIR3665-201ENST00000578708 105 ntBASIC23.15■■□□□ 1.3
CLRN1P58418 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CLRN1P58418 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC23.15■■□□□ 1.3
CLRN1P58418 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC23.15■■□□□ 1.3
CLRN1P58418 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC23.14■■□□□ 1.3
CLRN1P58418 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC23.14■■□□□ 1.29
CLRN1P58418 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC23.14■■□□□ 1.29
CLRN1P58418 AL139393.2-201ENST00000608721 2025 ntBASIC23.14■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 8.2 ms