Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
HLA-DQA1P01909 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
HLA-DQA1P01909 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HLA-DQA1P01909 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC19.74■□□□□ 0.75
HLA-DQA1P01909 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HLA-DQA1P01909 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HLA-DQA1P01909 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HLA-DQA1P01909 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HLA-DQA1P01909 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
HLA-DQA1P01909 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
HLA-DQA1P01909 AC015813.7-201ENST00000623294 581 ntBASIC19.72■□□□□ 0.75
HLA-DQA1P01909 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HLA-DQA1P01909 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HLA-DQA1P01909 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HLA-DQA1P01909 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HLA-DQA1P01909 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
HLA-DQA1P01909 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HLA-DQA1P01909 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HLA-DQA1P01909 DRD5P2-201ENST00000421395 2012 ntBASIC19.69■□□□□ 0.74
HLA-DQA1P01909 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HLA-DQA1P01909 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HLA-DQA1P01909 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC19.68■□□□□ 0.74
HLA-DQA1P01909 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
HLA-DQA1P01909 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC19.68■□□□□ 0.74
HLA-DQA1P01909 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC19.68■□□□□ 0.74
HLA-DQA1P01909 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
HLA-DQA1P01909 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
HLA-DQA1P01909 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC19.67■□□□□ 0.74
HLA-DQA1P01909 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
HLA-DQA1P01909 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
HLA-DQA1P01909 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
HLA-DQA1P01909 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DQA1P01909 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
HLA-DQA1P01909 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC19.65■□□□□ 0.74
HLA-DQA1P01909 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DQA1P01909 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC19.65■□□□□ 0.74
HLA-DQA1P01909 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DQA1P01909 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DQA1P01909 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HLA-DQA1P01909 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HLA-DQA1P01909 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC19.64■□□□□ 0.73
HLA-DQA1P01909 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HLA-DQA1P01909 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HLA-DQA1P01909 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC19.64■□□□□ 0.73
HLA-DQA1P01909 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DQA1P01909 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DQA1P01909 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DQA1P01909 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DQA1P01909 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DQA1P01909 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HLA-DQA1P01909 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
HLA-DQA1P01909 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HLA-DQA1P01909 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HLA-DQA1P01909 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC19.61■□□□□ 0.73
HLA-DQA1P01909 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HLA-DQA1P01909 AL135925.1-201ENST00000605920 1701 ntBASIC19.6■□□□□ 0.73
HLA-DQA1P01909 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HLA-DQA1P01909 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HLA-DQA1P01909 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HLA-DQA1P01909 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC19.59■□□□□ 0.73
HLA-DQA1P01909 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
HLA-DQA1P01909 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC19.59■□□□□ 0.73
HLA-DQA1P01909 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HLA-DQA1P01909 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HLA-DQA1P01909 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HLA-DQA1P01909 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HLA-DQA1P01909 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
HLA-DQA1P01909 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HLA-DQA1P01909 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HLA-DQA1P01909 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DQA1P01909 AL139393.2-201ENST00000608721 2025 ntBASIC19.54■□□□□ 0.72
HLA-DQA1P01909 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DQA1P01909 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
HLA-DQA1P01909 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
HLA-DQA1P01909 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DQA1P01909 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DQA1P01909 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DQA1P01909 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DQA1P01909 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HLA-DQA1P01909 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HLA-DQA1P01909 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HLA-DQA1P01909 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HLA-DQA1P01909 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HLA-DQA1P01909 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
HLA-DQA1P01909 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC19.52■□□□□ 0.72
HLA-DQA1P01909 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DQA1P01909 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.51■□□□□ 0.71
HLA-DQA1P01909 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
HLA-DQA1P01909 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DQA1P01909 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DQA1P01909 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DQA1P01909 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HLA-DQA1P01909 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DQA1P01909 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DQA1P01909 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
HLA-DQA1P01909 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
HLA-DQA1P01909 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DQA1P01909 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
HLA-DQA1P01909 PKM-203ENST00000389093 2279 ntTSL 5 BASIC19.48■□□□□ 0.71
HLA-DQA1P01909 PKM-204ENST00000449901 2526 ntTSL 2 BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms