Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC35.27■■■■□ 3.24
SENP3-EIF4A1A0A087X0R7 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC35.26■■■■□ 3.24
SENP3-EIF4A1A0A087X0R7 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC35.26■■■■□ 3.24
SENP3-EIF4A1A0A087X0R7 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC35.25■■■■□ 3.23
SENP3-EIF4A1A0A087X0R7 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC35.24■■■■□ 3.23
SENP3-EIF4A1A0A087X0R7 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
SENP3-EIF4A1A0A087X0R7 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC35.22■■■■□ 3.23
SENP3-EIF4A1A0A087X0R7 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC35.22■■■■□ 3.23
SENP3-EIF4A1A0A087X0R7 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC35.21■■■■□ 3.23
SENP3-EIF4A1A0A087X0R7 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC35.21■■■■□ 3.23
SENP3-EIF4A1A0A087X0R7 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.23
SENP3-EIF4A1A0A087X0R7 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.23
SENP3-EIF4A1A0A087X0R7 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.23
SENP3-EIF4A1A0A087X0R7 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.22
SENP3-EIF4A1A0A087X0R7 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC35.19■■■■□ 3.22
SENP3-EIF4A1A0A087X0R7 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC35.18■■■■□ 3.22
SENP3-EIF4A1A0A087X0R7 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC35.16■■■■□ 3.22
SENP3-EIF4A1A0A087X0R7 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
SENP3-EIF4A1A0A087X0R7 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC35.15■■■■□ 3.22
SENP3-EIF4A1A0A087X0R7 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC35.14■■■■□ 3.22
SENP3-EIF4A1A0A087X0R7 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC35.14■■■■□ 3.22
SENP3-EIF4A1A0A087X0R7 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC35.13■■■■□ 3.21
SENP3-EIF4A1A0A087X0R7 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC35.13■■■■□ 3.21
SENP3-EIF4A1A0A087X0R7 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC35.13■■■■□ 3.21
SENP3-EIF4A1A0A087X0R7 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC35.12■■■■□ 3.21
SENP3-EIF4A1A0A087X0R7 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC35.12■■■■□ 3.21
SENP3-EIF4A1A0A087X0R7 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC35.12■■■■□ 3.21
SENP3-EIF4A1A0A087X0R7 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC35.11■■■■□ 3.21
SENP3-EIF4A1A0A087X0R7 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC35.11■■■■□ 3.21
SENP3-EIF4A1A0A087X0R7 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC35.11■■■■□ 3.21
SENP3-EIF4A1A0A087X0R7 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC35.1■■■■□ 3.21
SENP3-EIF4A1A0A087X0R7 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC35.09■■■■□ 3.21
SENP3-EIF4A1A0A087X0R7 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC35.08■■■■□ 3.21
SENP3-EIF4A1A0A087X0R7 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC35.08■■■■□ 3.21
SENP3-EIF4A1A0A087X0R7 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC35.08■■■■□ 3.21
SENP3-EIF4A1A0A087X0R7 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC35.08■■■■□ 3.21
SENP3-EIF4A1A0A087X0R7 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC35.07■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC35.06■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC35.06■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 DENR-202ENST00000455982 1052 ntTSL 5 BASIC35.05■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC35.05■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC35.05■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC35.05■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC35.04■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC35.04■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC35.04■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC35.04■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC35.03■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 MIR762-201ENST00000390236 83 ntBASIC35.03■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC35.03■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 HNRNPLP2-201ENST00000568980 1570 ntBASIC35.03■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC35.02■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC35.02■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC35.01■■■■□ 3.2
SENP3-EIF4A1A0A087X0R7 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC35■■■■□ 3.19
SENP3-EIF4A1A0A087X0R7 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC35■■■■□ 3.19
SENP3-EIF4A1A0A087X0R7 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
SENP3-EIF4A1A0A087X0R7 MIR3665-201ENST00000578708 105 ntBASIC35■■■■□ 3.19
SENP3-EIF4A1A0A087X0R7 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC34.99■■■■□ 3.19
SENP3-EIF4A1A0A087X0R7 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
SENP3-EIF4A1A0A087X0R7 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC34.98■■■■□ 3.19
SENP3-EIF4A1A0A087X0R7 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
SENP3-EIF4A1A0A087X0R7 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC34.98■■■■□ 3.19
SENP3-EIF4A1A0A087X0R7 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC34.97■■■■□ 3.19
SENP3-EIF4A1A0A087X0R7 MIR4449-201ENST00000578365 66 ntBASIC34.97■■■■□ 3.19
SENP3-EIF4A1A0A087X0R7 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC34.97■■■■□ 3.19
SENP3-EIF4A1A0A087X0R7 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
SENP3-EIF4A1A0A087X0R7 AC010864.1-201ENST00000609407 1511 ntBASIC34.96■■■■□ 3.19
SENP3-EIF4A1A0A087X0R7 BRD4-212ENST00000630599 726 ntTSL 2 BASIC34.96■■■■□ 3.19
SENP3-EIF4A1A0A087X0R7 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC34.96■■■■□ 3.19
SENP3-EIF4A1A0A087X0R7 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC34.96■■■■□ 3.19
SENP3-EIF4A1A0A087X0R7 HSD17B1P1-201ENST00000590052 955 ntBASIC34.95■■■■□ 3.19
SENP3-EIF4A1A0A087X0R7 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.19
SENP3-EIF4A1A0A087X0R7 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC34.95■■■■□ 3.19
SENP3-EIF4A1A0A087X0R7 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC34.94■■■■□ 3.18
SENP3-EIF4A1A0A087X0R7 ZNRF2P2-203ENST00000454624 420 ntBASIC34.94■■■■□ 3.18
SENP3-EIF4A1A0A087X0R7 RPS2-202ENST00000526522 924 ntTSL 2 BASIC34.94■■■■□ 3.18
SENP3-EIF4A1A0A087X0R7 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC34.94■■■■□ 3.18
SENP3-EIF4A1A0A087X0R7 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
SENP3-EIF4A1A0A087X0R7 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC34.93■■■■□ 3.18
SENP3-EIF4A1A0A087X0R7 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC34.93■■■■□ 3.18
SENP3-EIF4A1A0A087X0R7 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC34.92■■■■□ 3.18
SENP3-EIF4A1A0A087X0R7 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC34.92■■■■□ 3.18
SENP3-EIF4A1A0A087X0R7 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC34.92■■■■□ 3.18
SENP3-EIF4A1A0A087X0R7 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC34.92■■■■□ 3.18
SENP3-EIF4A1A0A087X0R7 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC34.91■■■■□ 3.18
SENP3-EIF4A1A0A087X0R7 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC34.91■■■■□ 3.18
SENP3-EIF4A1A0A087X0R7 AC087741.3-201ENST00000624270 1347 ntBASIC34.9■■■■□ 3.18
SENP3-EIF4A1A0A087X0R7 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
SENP3-EIF4A1A0A087X0R7 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC34.89■■■■□ 3.18
SENP3-EIF4A1A0A087X0R7 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
SENP3-EIF4A1A0A087X0R7 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
SENP3-EIF4A1A0A087X0R7 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC34.89■■■■□ 3.18
SENP3-EIF4A1A0A087X0R7 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC34.89■■■■□ 3.18
SENP3-EIF4A1A0A087X0R7 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC34.88■■■■□ 3.17
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms