Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
AP4S1Q9Y587 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
AP4S1Q9Y587 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
AP4S1Q9Y587 TSPY9P-201ENST00000440215 945 ntBASIC19.31■□□□□ 0.68
AP4S1Q9Y587 TSPY11P-201ENST00000442607 1045 ntBASIC19.31■□□□□ 0.68
AP4S1Q9Y587 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
AP4S1Q9Y587 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.31■□□□□ 0.68
AP4S1Q9Y587 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.31■□□□□ 0.68
AP4S1Q9Y587 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
AP4S1Q9Y587 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
AP4S1Q9Y587 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
AP4S1Q9Y587 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.31■□□□□ 0.68
AP4S1Q9Y587 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
AP4S1Q9Y587 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
AP4S1Q9Y587 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
AP4S1Q9Y587 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 AC012354.3-201ENST00000623734 483 ntBASIC19.3■□□□□ 0.68
AP4S1Q9Y587 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.3■□□□□ 0.68
AP4S1Q9Y587 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
AP4S1Q9Y587 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.29■□□□□ 0.68
AP4S1Q9Y587 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
AP4S1Q9Y587 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
AP4S1Q9Y587 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
AP4S1Q9Y587 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
AP4S1Q9Y587 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
AP4S1Q9Y587 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
AP4S1Q9Y587 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.29■□□□□ 0.68
AP4S1Q9Y587 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.29■□□□□ 0.68
AP4S1Q9Y587 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
AP4S1Q9Y587 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.29■□□□□ 0.68
AP4S1Q9Y587 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
AP4S1Q9Y587 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
AP4S1Q9Y587 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
AP4S1Q9Y587 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
AP4S1Q9Y587 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
AP4S1Q9Y587 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
AP4S1Q9Y587 MIR6724-1-201ENST00000616420 92 ntBASIC19.28■□□□□ 0.68
AP4S1Q9Y587 MIR6724-2-201ENST00000616483 92 ntBASIC19.28■□□□□ 0.68
AP4S1Q9Y587 MIR6724-4-201ENST00000617390 92 ntBASIC19.28■□□□□ 0.68
AP4S1Q9Y587 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.28■□□□□ 0.68
AP4S1Q9Y587 MIR6724-3-201ENST00000622482 92 ntBASIC19.28■□□□□ 0.68
AP4S1Q9Y587 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
AP4S1Q9Y587 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.28■□□□□ 0.68
AP4S1Q9Y587 AC138932.1-201ENST00000534164 6830 ntBASIC19.28■□□□□ 0.68
AP4S1Q9Y587 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
AP4S1Q9Y587 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
AP4S1Q9Y587 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
AP4S1Q9Y587 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
AP4S1Q9Y587 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
AP4S1Q9Y587 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
AP4S1Q9Y587 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
AP4S1Q9Y587 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
AP4S1Q9Y587 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
AP4S1Q9Y587 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
AP4S1Q9Y587 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
AP4S1Q9Y587 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
AP4S1Q9Y587 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
AP4S1Q9Y587 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC19.27■□□□□ 0.68
AP4S1Q9Y587 AP005435.1-201ENST00000529293 1178 ntBASIC19.27■□□□□ 0.68
AP4S1Q9Y587 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
AP4S1Q9Y587 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
AP4S1Q9Y587 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.27■□□□□ 0.68
AP4S1Q9Y587 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
AP4S1Q9Y587 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
AP4S1Q9Y587 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.27■□□□□ 0.68
AP4S1Q9Y587 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
AP4S1Q9Y587 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
AP4S1Q9Y587 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
AP4S1Q9Y587 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
AP4S1Q9Y587 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
AP4S1Q9Y587 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.27■□□□□ 0.67
AP4S1Q9Y587 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
AP4S1Q9Y587 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
AP4S1Q9Y587 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.26■□□□□ 0.67
AP4S1Q9Y587 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
AP4S1Q9Y587 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
AP4S1Q9Y587 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
AP4S1Q9Y587 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms