Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
FOXA3P55318 TFPT-201ENST00000391757 774 ntTSL 5 BASIC15.34■□□□□ 0.05
FOXA3P55318 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA3P55318 BX664725.1-201ENST00000438252 379 ntBASIC15.34■□□□□ 0.05
FOXA3P55318 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC15.34■□□□□ 0.05
FOXA3P55318 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
FOXA3P55318 pRNA.6-201ENST00000610482 90 ntBASIC15.34■□□□□ 0.05
FOXA3P55318 pRNA.5-201ENST00000612139 90 ntBASIC15.34■□□□□ 0.05
FOXA3P55318 pRNA.11-201ENST00000618423 90 ntBASIC15.34■□□□□ 0.05
FOXA3P55318 pRNA.13-201ENST00000619112 90 ntBASIC15.34■□□□□ 0.05
FOXA3P55318 BRD4-212ENST00000630599 726 ntTSL 2 BASIC15.34■□□□□ 0.05
FOXA3P55318 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA3P55318 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA3P55318 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC15.34■□□□□ 0.05
FOXA3P55318 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
FOXA3P55318 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
FOXA3P55318 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC15.34■□□□□ 0.05
FOXA3P55318 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
FOXA3P55318 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
FOXA3P55318 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
FOXA3P55318 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
FOXA3P55318 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
FOXA3P55318 FP700111.2-201ENST00000619190 1892 ntBASIC15.33■□□□□ 0.05
FOXA3P55318 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
FOXA3P55318 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
FOXA3P55318 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
FOXA3P55318 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
FOXA3P55318 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
FOXA3P55318 AC004408.2-201ENST00000623613 2777 ntBASIC15.33■□□□□ 0.04
FOXA3P55318 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA3P55318 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
FOXA3P55318 AL031848.2-201ENST00000607670 837 ntBASIC15.33■□□□□ 0.04
FOXA3P55318 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA3P55318 EXOG-217ENST00000630638 197 ntTSL 5 BASIC15.33■□□□□ 0.04
FOXA3P55318 AC026471.1-201ENST00000564629 3026 ntBASIC15.33■□□□□ 0.04
FOXA3P55318 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA3P55318 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC15.33■□□□□ 0.04
FOXA3P55318 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA3P55318 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA3P55318 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA3P55318 AP000974.1-201ENST00000623909 2387 ntBASIC15.33■□□□□ 0.04
FOXA3P55318 TCF3P1-201ENST00000423021 1937 ntBASIC15.33■□□□□ 0.04
FOXA3P55318 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA3P55318 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA3P55318 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
FOXA3P55318 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA3P55318 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA3P55318 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
FOXA3P55318 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA3P55318 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
FOXA3P55318 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA3P55318 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC15.32■□□□□ 0.04
FOXA3P55318 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC15.32■□□□□ 0.04
FOXA3P55318 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC15.32■□□□□ 0.04
FOXA3P55318 CD72-202ENST00000378430 585 ntTSL 3 BASIC15.32■□□□□ 0.04
FOXA3P55318 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC15.32■□□□□ 0.04
FOXA3P55318 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA3P55318 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA3P55318 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
FOXA3P55318 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC15.32■□□□□ 0.04
FOXA3P55318 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA3P55318 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA3P55318 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA3P55318 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA3P55318 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA3P55318 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC15.32■□□□□ 0.04
FOXA3P55318 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA3P55318 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA3P55318 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC15.31■□□□□ 0.04
FOXA3P55318 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA3P55318 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA3P55318 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA3P55318 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA3P55318 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA3P55318 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC15.31■□□□□ 0.04
FOXA3P55318 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA3P55318 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
FOXA3P55318 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC15.31■□□□□ 0.04
FOXA3P55318 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC15.31■□□□□ 0.04
FOXA3P55318 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA3P55318 AL117332.1-201ENST00000622628 974 ntBASIC15.31■□□□□ 0.04
FOXA3P55318 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC15.31■□□□□ 0.04
FOXA3P55318 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC15.31■□□□□ 0.04
FOXA3P55318 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
FOXA3P55318 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA3P55318 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA3P55318 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA3P55318 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA3P55318 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC15.31■□□□□ 0.04
FOXA3P55318 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA3P55318 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA3P55318 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA3P55318 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA3P55318 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA3P55318 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA3P55318 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA3P55318 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
FOXA3P55318 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA3P55318 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA3P55318 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms