Protein–RNA interactions for Protein: P37840

SNCA, Alpha-synuclein, humanhuman

Predictions only

Length 140 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNCAP37840 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SNCAP37840 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SNCAP37840 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.78■□□□□ 0.28
SNCAP37840 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SNCAP37840 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SNCAP37840 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
SNCAP37840 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SNCAP37840 AC131281.2-201ENST00000520478 145 ntBASIC16.78■□□□□ 0.28
SNCAP37840 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SNCAP37840 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SNCAP37840 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC16.78■□□□□ 0.28
SNCAP37840 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SNCAP37840 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC16.78■□□□□ 0.28
SNCAP37840 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SNCAP37840 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SNCAP37840 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SNCAP37840 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SNCAP37840 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SNCAP37840 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SNCAP37840 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
SNCAP37840 AC006128.1-201ENST00000624704 1661 ntBASIC16.78■□□□□ 0.28
SNCAP37840 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SNCAP37840 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SNCAP37840 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SNCAP37840 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SNCAP37840 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
SNCAP37840 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SNCAP37840 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
SNCAP37840 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC16.77■□□□□ 0.28
SNCAP37840 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SNCAP37840 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SNCAP37840 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
SNCAP37840 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC16.77■□□□□ 0.28
SNCAP37840 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC16.77■□□□□ 0.28
SNCAP37840 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC16.77■□□□□ 0.28
SNCAP37840 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC16.77■□□□□ 0.28
SNCAP37840 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC16.77■□□□□ 0.28
SNCAP37840 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC16.77■□□□□ 0.28
SNCAP37840 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
SNCAP37840 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SNCAP37840 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SNCAP37840 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SNCAP37840 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
SNCAP37840 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SNCAP37840 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SNCAP37840 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SNCAP37840 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SNCAP37840 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
SNCAP37840 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.27
SNCAP37840 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
SNCAP37840 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SNCAP37840 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SNCAP37840 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SNCAP37840 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SNCAP37840 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SNCAP37840 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
SNCAP37840 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SNCAP37840 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SNCAP37840 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
SNCAP37840 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SNCAP37840 SNX3-202ENST00000349379 890 ntTSL 2 BASIC16.76■□□□□ 0.27
SNCAP37840 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC16.76■□□□□ 0.27
SNCAP37840 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
SNCAP37840 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC16.76■□□□□ 0.27
SNCAP37840 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC16.76■□□□□ 0.27
SNCAP37840 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.76■□□□□ 0.27
SNCAP37840 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SNCAP37840 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SNCAP37840 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SNCAP37840 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SNCAP37840 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SNCAP37840 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SNCAP37840 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC16.76■□□□□ 0.27
SNCAP37840 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC16.76■□□□□ 0.27
SNCAP37840 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SNCAP37840 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SNCAP37840 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
SNCAP37840 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC16.75■□□□□ 0.27
SNCAP37840 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC16.75■□□□□ 0.27
SNCAP37840 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SNCAP37840 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC16.75■□□□□ 0.27
SNCAP37840 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SNCAP37840 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SNCAP37840 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
SNCAP37840 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SNCAP37840 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
SNCAP37840 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SNCAP37840 AL136116.3-201ENST00000402907 1138 ntBASIC16.75■□□□□ 0.27
SNCAP37840 BX842568.3-201ENST00000418104 571 ntBASIC16.75■□□□□ 0.27
SNCAP37840 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC16.75■□□□□ 0.27
SNCAP37840 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SNCAP37840 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SNCAP37840 AC026471.1-201ENST00000564629 3026 ntBASIC16.75■□□□□ 0.27
SNCAP37840 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SNCAP37840 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SNCAP37840 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SNCAP37840 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC16.75■□□□□ 0.27
SNCAP37840 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
SNCAP37840 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC16.75■□□□□ 0.27
SNCAP37840 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms