Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
PROM1O43490 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PROM1O43490 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.42■□□□□ 0.7
PROM1O43490 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
PROM1O43490 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PROM1O43490 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.41■□□□□ 0.7
PROM1O43490 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PROM1O43490 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.41■□□□□ 0.7
PROM1O43490 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
PROM1O43490 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PROM1O43490 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
PROM1O43490 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
PROM1O43490 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PROM1O43490 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.41■□□□□ 0.7
PROM1O43490 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PROM1O43490 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.41■□□□□ 0.7
PROM1O43490 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.41■□□□□ 0.7
PROM1O43490 FAM21FP-204ENST00000608637 956 ntBASIC19.41■□□□□ 0.7
PROM1O43490 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.41■□□□□ 0.7
PROM1O43490 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PROM1O43490 AC068338.2-201ENST00000563278 1430 ntBASIC19.41■□□□□ 0.7
PROM1O43490 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
PROM1O43490 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PROM1O43490 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PROM1O43490 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PROM1O43490 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PROM1O43490 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PROM1O43490 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
PROM1O43490 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
PROM1O43490 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
PROM1O43490 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PROM1O43490 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PROM1O43490 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
PROM1O43490 ID1-201ENST00000376105 1233 ntBASIC19.4■□□□□ 0.7
PROM1O43490 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
PROM1O43490 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PROM1O43490 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
PROM1O43490 AC080038.1-201ENST00000611274 1154 ntBASIC19.4■□□□□ 0.7
PROM1O43490 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.4■□□□□ 0.7
PROM1O43490 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PROM1O43490 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.4■□□□□ 0.7
PROM1O43490 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PROM1O43490 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
PROM1O43490 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.4■□□□□ 0.7
PROM1O43490 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PROM1O43490 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.4■□□□□ 0.7
PROM1O43490 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
PROM1O43490 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
PROM1O43490 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
PROM1O43490 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
PROM1O43490 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
PROM1O43490 AC007322.1-201ENST00000426983 750 ntBASIC19.39■□□□□ 0.69
PROM1O43490 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.39■□□□□ 0.69
PROM1O43490 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.39■□□□□ 0.69
PROM1O43490 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.39■□□□□ 0.69
PROM1O43490 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.39■□□□□ 0.69
PROM1O43490 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.39■□□□□ 0.69
PROM1O43490 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PROM1O43490 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.39■□□□□ 0.69
PROM1O43490 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PROM1O43490 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
PROM1O43490 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
PROM1O43490 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
PROM1O43490 FP700111.2-201ENST00000619190 1892 ntBASIC19.39■□□□□ 0.69
PROM1O43490 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PROM1O43490 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.39■□□□□ 0.69
PROM1O43490 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PROM1O43490 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
PROM1O43490 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PROM1O43490 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.38■□□□□ 0.69
PROM1O43490 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PROM1O43490 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PROM1O43490 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PROM1O43490 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PROM1O43490 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PROM1O43490 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.38■□□□□ 0.69
PROM1O43490 AC016405.3-201ENST00000607710 860 ntBASIC19.38■□□□□ 0.69
PROM1O43490 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.38■□□□□ 0.69
PROM1O43490 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PROM1O43490 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
PROM1O43490 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
PROM1O43490 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PROM1O43490 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PROM1O43490 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PROM1O43490 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
PROM1O43490 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PROM1O43490 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PROM1O43490 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PROM1O43490 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
PROM1O43490 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.37■□□□□ 0.69
PROM1O43490 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.37■□□□□ 0.69
PROM1O43490 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.37■□□□□ 0.69
PROM1O43490 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.37■□□□□ 0.69
PROM1O43490 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.37■□□□□ 0.69
PROM1O43490 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.37■□□□□ 0.69
PROM1O43490 AC073111.5-205ENST00000641717 521 ntBASIC19.37■□□□□ 0.69
PROM1O43490 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.37■□□□□ 0.69
PROM1O43490 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
PROM1O43490 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PROM1O43490 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms