Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 AC091799.1-201ENST00000422823 811 ntBASIC21.36■■□□□ 1.01
DDX56Q9NY93 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.36■■□□□ 1.01
DDX56Q9NY93 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.36■■□□□ 1.01
DDX56Q9NY93 MIR2861-201ENST00000636310 90 ntBASIC21.36■■□□□ 1.01
DDX56Q9NY93 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
DDX56Q9NY93 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
DDX56Q9NY93 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.36■■□□□ 1.01
DDX56Q9NY93 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
DDX56Q9NY93 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.36■■□□□ 1.01
DDX56Q9NY93 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.36■■□□□ 1.01
DDX56Q9NY93 AC092720.2-201ENST00000602388 1665 ntBASIC21.36■■□□□ 1.01
DDX56Q9NY93 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
DDX56Q9NY93 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.36■■□□□ 1.01
DDX56Q9NY93 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
DDX56Q9NY93 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
DDX56Q9NY93 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
DDX56Q9NY93 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
DDX56Q9NY93 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
DDX56Q9NY93 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
DDX56Q9NY93 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
DDX56Q9NY93 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.35■■□□□ 1.01
DDX56Q9NY93 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
DDX56Q9NY93 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
DDX56Q9NY93 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
DDX56Q9NY93 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
DDX56Q9NY93 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
DDX56Q9NY93 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.35■■□□□ 1.01
DDX56Q9NY93 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.35■■□□□ 1.01
DDX56Q9NY93 AL121603.2-201ENST00000557373 2117 ntBASIC21.35■■□□□ 1.01
DDX56Q9NY93 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
DDX56Q9NY93 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
DDX56Q9NY93 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.35■■□□□ 1.01
DDX56Q9NY93 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
DDX56Q9NY93 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
DDX56Q9NY93 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.34■■□□□ 1.01
DDX56Q9NY93 AC019069.1-201ENST00000610008 1333 ntBASIC21.34■■□□□ 1.01
DDX56Q9NY93 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
DDX56Q9NY93 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
DDX56Q9NY93 AL162377.1-201ENST00000618844 1793 ntBASIC21.34■■□□□ 1.01
DDX56Q9NY93 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
DDX56Q9NY93 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
DDX56Q9NY93 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
DDX56Q9NY93 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
DDX56Q9NY93 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
DDX56Q9NY93 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.34■■□□□ 1.01
DDX56Q9NY93 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
DDX56Q9NY93 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
DDX56Q9NY93 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
DDX56Q9NY93 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.34■■□□□ 1.01
DDX56Q9NY93 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.34■■□□□ 1.01
DDX56Q9NY93 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
DDX56Q9NY93 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.34■■□□□ 1.01
DDX56Q9NY93 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.34■■□□□ 1.01
DDX56Q9NY93 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC21.34■■□□□ 1.01
DDX56Q9NY93 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
DDX56Q9NY93 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
DDX56Q9NY93 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
DDX56Q9NY93 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
DDX56Q9NY93 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
DDX56Q9NY93 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.33■■□□□ 1.01
DDX56Q9NY93 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
DDX56Q9NY93 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
DDX56Q9NY93 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
DDX56Q9NY93 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21.33■■□□□ 1.01
DDX56Q9NY93 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
DDX56Q9NY93 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.33■■□□□ 1.01
DDX56Q9NY93 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.33■■□□□ 1.01
DDX56Q9NY93 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
DDX56Q9NY93 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
DDX56Q9NY93 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.33■■□□□ 1
DDX56Q9NY93 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
DDX56Q9NY93 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.32■■□□□ 1
DDX56Q9NY93 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
DDX56Q9NY93 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.32■■□□□ 1
DDX56Q9NY93 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
DDX56Q9NY93 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
DDX56Q9NY93 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC21.32■■□□□ 1
DDX56Q9NY93 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
DDX56Q9NY93 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.32■■□□□ 1
DDX56Q9NY93 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
DDX56Q9NY93 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC21.32■■□□□ 1
DDX56Q9NY93 AC007322.3-201ENST00000426526 701 ntBASIC21.32■■□□□ 1
DDX56Q9NY93 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.32■■□□□ 1
DDX56Q9NY93 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.32■■□□□ 1
DDX56Q9NY93 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.32■■□□□ 1
DDX56Q9NY93 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.32■■□□□ 1
DDX56Q9NY93 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC21.32■■□□□ 1
DDX56Q9NY93 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
DDX56Q9NY93 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
DDX56Q9NY93 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.32■■□□□ 1
DDX56Q9NY93 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
DDX56Q9NY93 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.32■■□□□ 1
DDX56Q9NY93 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
DDX56Q9NY93 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
DDX56Q9NY93 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
DDX56Q9NY93 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
DDX56Q9NY93 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
DDX56Q9NY93 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.32■■□□□ 1
DDX56Q9NY93 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
DDX56Q9NY93 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms