Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RFWD3Q6PCD5 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RFWD3Q6PCD5 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
RFWD3Q6PCD5 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFWD3Q6PCD5 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
RFWD3Q6PCD5 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFWD3Q6PCD5 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFWD3Q6PCD5 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
RFWD3Q6PCD5 CDV3P1-201ENST00000471403 739 ntBASIC21.37■■□□□ 1.01
RFWD3Q6PCD5 AC098934.4-201ENST00000564127 592 ntBASIC21.37■■□□□ 1.01
RFWD3Q6PCD5 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RFWD3Q6PCD5 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFWD3Q6PCD5 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFWD3Q6PCD5 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.37■■□□□ 1.01
RFWD3Q6PCD5 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFWD3Q6PCD5 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RFWD3Q6PCD5 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
RFWD3Q6PCD5 RNF165-205ENST00000588679 2904 ntBASIC21.37■■□□□ 1.01
RFWD3Q6PCD5 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFWD3Q6PCD5 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFWD3Q6PCD5 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RFWD3Q6PCD5 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.36■■□□□ 1.01
RFWD3Q6PCD5 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
RFWD3Q6PCD5 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.36■■□□□ 1.01
RFWD3Q6PCD5 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RFWD3Q6PCD5 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RFWD3Q6PCD5 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.36■■□□□ 1.01
RFWD3Q6PCD5 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
RFWD3Q6PCD5 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RFWD3Q6PCD5 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RFWD3Q6PCD5 AL512625.2-201ENST00000417533 625 ntBASIC21.36■■□□□ 1.01
RFWD3Q6PCD5 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.36■■□□□ 1.01
RFWD3Q6PCD5 AC010980.2-201ENST00000587099 1412 ntBASIC21.36■■□□□ 1.01
RFWD3Q6PCD5 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RFWD3Q6PCD5 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RFWD3Q6PCD5 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.36■■□□□ 1.01
RFWD3Q6PCD5 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
RFWD3Q6PCD5 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RFWD3Q6PCD5 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
RFWD3Q6PCD5 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
RFWD3Q6PCD5 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
RFWD3Q6PCD5 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RFWD3Q6PCD5 MIPEPP3-201ENST00000412105 444 ntBASIC21.35■■□□□ 1.01
RFWD3Q6PCD5 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.35■■□□□ 1.01
RFWD3Q6PCD5 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.35■■□□□ 1.01
RFWD3Q6PCD5 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.35■■□□□ 1.01
RFWD3Q6PCD5 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RFWD3Q6PCD5 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RFWD3Q6PCD5 AL157384.1-201ENST00000445995 2473 ntBASIC21.35■■□□□ 1.01
RFWD3Q6PCD5 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
RFWD3Q6PCD5 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.35■■□□□ 1.01
RFWD3Q6PCD5 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RFWD3Q6PCD5 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.34■■□□□ 1.01
RFWD3Q6PCD5 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
RFWD3Q6PCD5 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.34■■□□□ 1.01
RFWD3Q6PCD5 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
RFWD3Q6PCD5 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
RFWD3Q6PCD5 AC007322.3-201ENST00000426526 701 ntBASIC21.34■■□□□ 1.01
RFWD3Q6PCD5 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.34■■□□□ 1.01
RFWD3Q6PCD5 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.34■■□□□ 1.01
RFWD3Q6PCD5 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RFWD3Q6PCD5 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.34■■□□□ 1.01
RFWD3Q6PCD5 FAM21FP-204ENST00000608637 956 ntBASIC21.34■■□□□ 1.01
RFWD3Q6PCD5 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
RFWD3Q6PCD5 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RFWD3Q6PCD5 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.33■■□□□ 1.01
RFWD3Q6PCD5 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RFWD3Q6PCD5 PKD1P6-201ENST00000343738 4769 ntBASIC21.33■■□□□ 1.01
RFWD3Q6PCD5 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RFWD3Q6PCD5 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.33■■□□□ 1.01
RFWD3Q6PCD5 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.33■■□□□ 1.01
RFWD3Q6PCD5 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
RFWD3Q6PCD5 BX276092.2-201ENST00000417668 665 ntBASIC21.33■■□□□ 1.01
RFWD3Q6PCD5 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.33■■□□□ 1.01
RFWD3Q6PCD5 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21.33■■□□□ 1.01
RFWD3Q6PCD5 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.33■■□□□ 1.01
RFWD3Q6PCD5 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC21.33■■□□□ 1.01
RFWD3Q6PCD5 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RFWD3Q6PCD5 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.33■■□□□ 1.01
RFWD3Q6PCD5 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.33■■□□□ 1.01
RFWD3Q6PCD5 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RFWD3Q6PCD5 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
RFWD3Q6PCD5 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.33■■□□□ 1
RFWD3Q6PCD5 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
RFWD3Q6PCD5 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.33■■□□□ 1
RFWD3Q6PCD5 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.32■■□□□ 1
RFWD3Q6PCD5 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RFWD3Q6PCD5 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
RFWD3Q6PCD5 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
RFWD3Q6PCD5 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RFWD3Q6PCD5 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.32■■□□□ 1
RFWD3Q6PCD5 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.32■■□□□ 1
RFWD3Q6PCD5 AL355472.2-201ENST00000422958 438 ntBASIC21.32■■□□□ 1
RFWD3Q6PCD5 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.32■■□□□ 1
RFWD3Q6PCD5 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.32■■□□□ 1
RFWD3Q6PCD5 AC116050.2-201ENST00000612102 1779 ntBASIC21.32■■□□□ 1
RFWD3Q6PCD5 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.32■■□□□ 1
RFWD3Q6PCD5 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
RFWD3Q6PCD5 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
RFWD3Q6PCD5 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms