Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 AC016769.1-201ENST00000409132 1010 ntBASIC20.73■□□□□ 0.91
HADHAP40939 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.73■□□□□ 0.91
HADHAP40939 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HADHAP40939 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HADHAP40939 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
HADHAP40939 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HADHAP40939 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.73■□□□□ 0.91
HADHAP40939 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.73■□□□□ 0.91
HADHAP40939 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
HADHAP40939 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HADHAP40939 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
HADHAP40939 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
HADHAP40939 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HADHAP40939 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
HADHAP40939 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HADHAP40939 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HADHAP40939 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HADHAP40939 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
HADHAP40939 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HADHAP40939 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.72■□□□□ 0.91
HADHAP40939 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.72■□□□□ 0.91
HADHAP40939 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.72■□□□□ 0.91
HADHAP40939 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.72■□□□□ 0.91
HADHAP40939 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.72■□□□□ 0.91
HADHAP40939 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HADHAP40939 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HADHAP40939 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HADHAP40939 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
HADHAP40939 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.72■□□□□ 0.91
HADHAP40939 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
HADHAP40939 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HADHAP40939 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
HADHAP40939 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HADHAP40939 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HADHAP40939 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HADHAP40939 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.71■□□□□ 0.91
HADHAP40939 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.71■□□□□ 0.91
HADHAP40939 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.71■□□□□ 0.91
HADHAP40939 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HADHAP40939 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HADHAP40939 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HADHAP40939 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HADHAP40939 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HADHAP40939 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
HADHAP40939 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HADHAP40939 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
HADHAP40939 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HADHAP40939 RBM17P2-201ENST00000616397 1405 ntBASIC20.7■□□□□ 0.9
HADHAP40939 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HADHAP40939 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
HADHAP40939 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
HADHAP40939 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.7■□□□□ 0.9
HADHAP40939 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HADHAP40939 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HADHAP40939 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HADHAP40939 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.7■□□□□ 0.9
HADHAP40939 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.7■□□□□ 0.9
HADHAP40939 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.7■□□□□ 0.9
HADHAP40939 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
HADHAP40939 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HADHAP40939 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
HADHAP40939 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
HADHAP40939 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
HADHAP40939 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
HADHAP40939 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HADHAP40939 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.69■□□□□ 0.9
HADHAP40939 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
HADHAP40939 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HADHAP40939 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.69■□□□□ 0.9
HADHAP40939 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HADHAP40939 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.69■□□□□ 0.9
HADHAP40939 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.69■□□□□ 0.9
HADHAP40939 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.69■□□□□ 0.9
HADHAP40939 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.69■□□□□ 0.9
HADHAP40939 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
HADHAP40939 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.69■□□□□ 0.9
HADHAP40939 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HADHAP40939 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HADHAP40939 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HADHAP40939 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HADHAP40939 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
HADHAP40939 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
HADHAP40939 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
HADHAP40939 AC007225.1-201ENST00000566331 1836 ntBASIC20.69■□□□□ 0.9
HADHAP40939 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HADHAP40939 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
HADHAP40939 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HADHAP40939 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HADHAP40939 AC011484.1-201ENST00000377652 1995 ntBASIC20.68■□□□□ 0.9
HADHAP40939 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
HADHAP40939 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.68■□□□□ 0.9
HADHAP40939 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
HADHAP40939 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HADHAP40939 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HADHAP40939 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.68■□□□□ 0.9
HADHAP40939 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
HADHAP40939 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
HADHAP40939 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HADHAP40939 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HADHAP40939 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms