Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 AL356740.2-201ENST00000601559 647 ntBASIC17.24■□□□□ 0.35
CD74P04233 AC136469.2-201ENST00000623944 1028 ntBASIC17.24■□□□□ 0.35
CD74P04233 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CD74P04233 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CD74P04233 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CD74P04233 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CD74P04233 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CD74P04233 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CD74P04233 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CD74P04233 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
CD74P04233 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CD74P04233 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CD74P04233 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.23■□□□□ 0.35
CD74P04233 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CD74P04233 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CD74P04233 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CD74P04233 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC17.23■□□□□ 0.35
CD74P04233 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC17.23■□□□□ 0.35
CD74P04233 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC17.23■□□□□ 0.35
CD74P04233 RASSF1-AS1-201ENST00000629828 790 ntBASIC17.23■□□□□ 0.35
CD74P04233 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC17.23■□□□□ 0.35
CD74P04233 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC17.23■□□□□ 0.35
CD74P04233 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CD74P04233 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CD74P04233 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC17.23■□□□□ 0.35
CD74P04233 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CD74P04233 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CD74P04233 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CD74P04233 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CD74P04233 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CD74P04233 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CD74P04233 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CD74P04233 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CD74P04233 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.22■□□□□ 0.35
CD74P04233 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.22■□□□□ 0.35
CD74P04233 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CD74P04233 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CD74P04233 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CD74P04233 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CD74P04233 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC17.22■□□□□ 0.35
CD74P04233 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CD74P04233 SERBP1P1-201ENST00000396021 1160 ntBASIC17.22■□□□□ 0.35
CD74P04233 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CD74P04233 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CD74P04233 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
CD74P04233 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CD74P04233 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CD74P04233 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CD74P04233 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CD74P04233 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
CD74P04233 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CD74P04233 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC17.21■□□□□ 0.35
CD74P04233 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC17.21■□□□□ 0.35
CD74P04233 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CD74P04233 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CD74P04233 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CD74P04233 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
CD74P04233 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CD74P04233 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CD74P04233 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.21■□□□□ 0.35
CD74P04233 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CD74P04233 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CD74P04233 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
CD74P04233 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.34
CD74P04233 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CD74P04233 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CD74P04233 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CD74P04233 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CD74P04233 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC17.2■□□□□ 0.34
CD74P04233 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC17.2■□□□□ 0.34
CD74P04233 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC17.2■□□□□ 0.34
CD74P04233 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.2■□□□□ 0.34
CD74P04233 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CD74P04233 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CD74P04233 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
CD74P04233 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CD74P04233 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
CD74P04233 AC005332.7-201ENST00000614046 2005 ntBASIC17.2■□□□□ 0.34
CD74P04233 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CD74P04233 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CD74P04233 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC17.2■□□□□ 0.34
CD74P04233 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CD74P04233 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CD74P04233 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CD74P04233 FXN-202ENST00000396364 980 ntTSL 5 BASIC17.2■□□□□ 0.34
CD74P04233 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CD74P04233 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CD74P04233 MIR3621-201ENST00000580529 85 ntBASIC17.2■□□□□ 0.34
CD74P04233 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.2■□□□□ 0.34
CD74P04233 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.2■□□□□ 0.34
CD74P04233 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CD74P04233 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CD74P04233 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CD74P04233 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CD74P04233 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CD74P04233 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
CD74P04233 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CD74P04233 SNX3-202ENST00000349379 890 ntTSL 2 BASIC17.19■□□□□ 0.34
CD74P04233 KRT16P3-201ENST00000439127 1283 ntBASIC17.19■□□□□ 0.34
CD74P04233 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms