Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC34.58■■■■□ 3.13
IFT140Q96RY7 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC34.58■■■■□ 3.13
IFT140Q96RY7 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC34.58■■■■□ 3.13
IFT140Q96RY7 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
IFT140Q96RY7 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC34.58■■■■□ 3.13
IFT140Q96RY7 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC34.58■■■■□ 3.13
IFT140Q96RY7 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC34.58■■■■□ 3.13
IFT140Q96RY7 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC34.58■■■■□ 3.13
IFT140Q96RY7 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC34.58■■■■□ 3.13
IFT140Q96RY7 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC34.58■■■■□ 3.13
IFT140Q96RY7 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC34.58■■■■□ 3.13
IFT140Q96RY7 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC34.58■■■■□ 3.13
IFT140Q96RY7 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC34.57■■■■□ 3.13
IFT140Q96RY7 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC34.57■■■■□ 3.12
IFT140Q96RY7 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC34.57■■■■□ 3.12
IFT140Q96RY7 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
IFT140Q96RY7 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC34.57■■■■□ 3.12
IFT140Q96RY7 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC34.57■■■■□ 3.12
IFT140Q96RY7 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC34.57■■■■□ 3.12
IFT140Q96RY7 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC34.57■■■■□ 3.12
IFT140Q96RY7 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC34.56■■■■□ 3.12
IFT140Q96RY7 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC34.56■■■■□ 3.12
IFT140Q96RY7 LINC01568-207ENST00000641790 1380 ntBASIC34.56■■■■□ 3.12
IFT140Q96RY7 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC34.56■■■■□ 3.12
IFT140Q96RY7 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC34.56■■■■□ 3.12
IFT140Q96RY7 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC34.56■■■■□ 3.12
IFT140Q96RY7 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC34.56■■■■□ 3.12
IFT140Q96RY7 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC34.56■■■■□ 3.12
IFT140Q96RY7 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC34.56■■■■□ 3.12
IFT140Q96RY7 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC34.55■■■■□ 3.12
IFT140Q96RY7 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC34.55■■■■□ 3.12
IFT140Q96RY7 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC34.55■■■■□ 3.12
IFT140Q96RY7 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC34.55■■■■□ 3.12
IFT140Q96RY7 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC34.55■■■■□ 3.12
IFT140Q96RY7 SLC25A3P1-201ENST00000443844 931 ntBASIC34.55■■■■□ 3.12
IFT140Q96RY7 FDX2-207ENST00000494368 584 ntTSL 4 BASIC34.55■■■■□ 3.12
IFT140Q96RY7 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC34.55■■■■□ 3.12
IFT140Q96RY7 AL031963.3-201ENST00000606441 850 ntBASIC34.55■■■■□ 3.12
IFT140Q96RY7 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC34.55■■■■□ 3.12
IFT140Q96RY7 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC34.55■■■■□ 3.12
IFT140Q96RY7 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
IFT140Q96RY7 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
IFT140Q96RY7 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
IFT140Q96RY7 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
IFT140Q96RY7 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
IFT140Q96RY7 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC34.54■■■■□ 3.12
IFT140Q96RY7 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
IFT140Q96RY7 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC34.54■■■■□ 3.12
IFT140Q96RY7 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
IFT140Q96RY7 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC34.54■■■■□ 3.12
IFT140Q96RY7 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC34.54■■■■□ 3.12
IFT140Q96RY7 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC34.54■■■■□ 3.12
IFT140Q96RY7 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC34.54■■■■□ 3.12
IFT140Q96RY7 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC34.54■■■■□ 3.12
IFT140Q96RY7 UNC93B2-201ENST00000285383 730 ntBASIC34.53■■■■□ 3.12
IFT140Q96RY7 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC34.53■■■■□ 3.12
IFT140Q96RY7 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC34.53■■■■□ 3.12
IFT140Q96RY7 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC34.53■■■■□ 3.12
IFT140Q96RY7 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC34.53■■■■□ 3.12
IFT140Q96RY7 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC34.53■■■■□ 3.12
IFT140Q96RY7 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC34.53■■■■□ 3.12
IFT140Q96RY7 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC34.53■■■■□ 3.12
IFT140Q96RY7 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
IFT140Q96RY7 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC34.53■■■■□ 3.12
IFT140Q96RY7 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
IFT140Q96RY7 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC34.53■■■■□ 3.12
IFT140Q96RY7 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC34.52■■■■□ 3.12
IFT140Q96RY7 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC34.52■■■■□ 3.12
IFT140Q96RY7 USF2-205ENST00000594064 1179 ntTSL 2 BASIC34.52■■■■□ 3.12
IFT140Q96RY7 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
IFT140Q96RY7 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC34.52■■■■□ 3.12
IFT140Q96RY7 CREM-210ENST00000374721 2020 ntTSL 5 BASIC34.52■■■■□ 3.12
IFT140Q96RY7 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
IFT140Q96RY7 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
IFT140Q96RY7 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC34.52■■■■□ 3.12
IFT140Q96RY7 CFL2-205ENST00000555765 632 ntTSL 2 BASIC34.52■■■■□ 3.12
IFT140Q96RY7 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC34.52■■■■□ 3.12
IFT140Q96RY7 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
IFT140Q96RY7 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC34.52■■■■□ 3.12
IFT140Q96RY7 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC34.51■■■■□ 3.12
IFT140Q96RY7 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC34.51■■■■□ 3.12
IFT140Q96RY7 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC34.51■■■■□ 3.12
IFT140Q96RY7 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.12
IFT140Q96RY7 AC116050.2-201ENST00000612102 1779 ntBASIC34.51■■■■□ 3.12
IFT140Q96RY7 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC34.51■■■■□ 3.11
IFT140Q96RY7 AL390719.1-204ENST00000412397 1219 ntBASIC34.51■■■■□ 3.11
IFT140Q96RY7 LTBR-211ENST00000543190 785 ntTSL 3 BASIC34.51■■■■□ 3.11
IFT140Q96RY7 AC073195.1-201ENST00000607241 877 ntBASIC34.51■■■■□ 3.11
IFT140Q96RY7 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC34.51■■■■□ 3.11
IFT140Q96RY7 GCA-201ENST00000233612 1694 ntTSL 2 BASIC34.5■■■■□ 3.11
IFT140Q96RY7 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC34.5■■■■□ 3.11
IFT140Q96RY7 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC34.5■■■■□ 3.11
IFT140Q96RY7 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC34.5■■■■□ 3.11
IFT140Q96RY7 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC34.5■■■■□ 3.11
IFT140Q96RY7 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
IFT140Q96RY7 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC34.5■■■■□ 3.11
IFT140Q96RY7 AC010947.1-201ENST00000623454 693 ntBASIC34.5■■■■□ 3.11
IFT140Q96RY7 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
IFT140Q96RY7 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
IFT140Q96RY7 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms