Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 AL034346.1-201ENST00000568244 1277 ntBASIC22.41■■□□□ 1.18
LRCH3Q96II8 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC22.41■■□□□ 1.18
LRCH3Q96II8 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
LRCH3Q96II8 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
LRCH3Q96II8 AC079598.2-202ENST00000546624 1451 ntBASIC22.41■■□□□ 1.18
LRCH3Q96II8 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
LRCH3Q96II8 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
LRCH3Q96II8 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC22.4■■□□□ 1.18
LRCH3Q96II8 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC22.4■■□□□ 1.18
LRCH3Q96II8 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
LRCH3Q96II8 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
LRCH3Q96II8 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
LRCH3Q96II8 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC22.4■■□□□ 1.18
LRCH3Q96II8 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
LRCH3Q96II8 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
LRCH3Q96II8 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
LRCH3Q96II8 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
LRCH3Q96II8 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
LRCH3Q96II8 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
LRCH3Q96II8 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
LRCH3Q96II8 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
LRCH3Q96II8 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC22.4■■□□□ 1.18
LRCH3Q96II8 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
LRCH3Q96II8 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC22.4■■□□□ 1.18
LRCH3Q96II8 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
LRCH3Q96II8 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
LRCH3Q96II8 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
LRCH3Q96II8 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.18
LRCH3Q96II8 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
LRCH3Q96II8 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
LRCH3Q96II8 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
LRCH3Q96II8 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC22.39■■□□□ 1.17
LRCH3Q96II8 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
LRCH3Q96II8 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC22.39■■□□□ 1.17
LRCH3Q96II8 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC22.39■■□□□ 1.17
LRCH3Q96II8 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC22.39■■□□□ 1.17
LRCH3Q96II8 KRT18P48-201ENST00000434763 852 ntBASIC22.39■■□□□ 1.17
LRCH3Q96II8 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
LRCH3Q96II8 RBM17P1-201ENST00000453646 1190 ntBASIC22.39■■□□□ 1.17
LRCH3Q96II8 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
LRCH3Q96II8 AP000525.1-201ENST00000608286 694 ntBASIC22.39■■□□□ 1.17
LRCH3Q96II8 AC120498.8-201ENST00000614275 531 ntBASIC22.39■■□□□ 1.17
LRCH3Q96II8 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
LRCH3Q96II8 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
LRCH3Q96II8 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC22.39■■□□□ 1.17
LRCH3Q96II8 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
LRCH3Q96II8 AC087633.2-202ENST00000565166 1439 ntBASIC22.39■■□□□ 1.17
LRCH3Q96II8 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC22.39■■□□□ 1.17
LRCH3Q96II8 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
LRCH3Q96II8 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
LRCH3Q96II8 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
LRCH3Q96II8 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC22.38■■□□□ 1.17
LRCH3Q96II8 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC22.38■■□□□ 1.17
LRCH3Q96II8 CDV3P1-201ENST00000471403 739 ntBASIC22.38■■□□□ 1.17
LRCH3Q96II8 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC22.38■■□□□ 1.17
LRCH3Q96II8 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
LRCH3Q96II8 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
LRCH3Q96II8 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
LRCH3Q96II8 ME2-208ENST00000638937 2471 ntTSL 5 BASIC22.37■■□□□ 1.17
LRCH3Q96II8 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
LRCH3Q96II8 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
LRCH3Q96II8 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
LRCH3Q96II8 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
LRCH3Q96II8 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
LRCH3Q96II8 CRYGFP-201ENST00000418459 633 ntBASIC22.37■■□□□ 1.17
LRCH3Q96II8 SLC25A3P1-201ENST00000443844 931 ntBASIC22.37■■□□□ 1.17
LRCH3Q96II8 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC22.37■■□□□ 1.17
LRCH3Q96II8 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC22.37■■□□□ 1.17
LRCH3Q96II8 AC091076.1-201ENST00000610741 619 ntBASIC22.37■■□□□ 1.17
LRCH3Q96II8 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC22.37■■□□□ 1.17
LRCH3Q96II8 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC22.37■■□□□ 1.17
LRCH3Q96II8 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC22.37■■□□□ 1.17
LRCH3Q96II8 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
LRCH3Q96II8 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC22.37■■□□□ 1.17
LRCH3Q96II8 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
LRCH3Q96II8 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC22.36■■□□□ 1.17
LRCH3Q96II8 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
LRCH3Q96II8 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
LRCH3Q96II8 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC22.36■■□□□ 1.17
LRCH3Q96II8 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
LRCH3Q96II8 MIR1238-201ENST00000408483 83 ntBASIC22.36■■□□□ 1.17
LRCH3Q96II8 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
LRCH3Q96II8 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC22.36■■□□□ 1.17
LRCH3Q96II8 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC22.36■■□□□ 1.17
LRCH3Q96II8 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC22.36■■□□□ 1.17
LRCH3Q96II8 GLDC-219ENST00000640208 420 ntTSL 2 BASIC22.36■■□□□ 1.17
LRCH3Q96II8 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC22.36■■□□□ 1.17
LRCH3Q96II8 KRT18P22-201ENST00000402024 1347 ntBASIC22.35■■□□□ 1.17
LRCH3Q96II8 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC22.35■■□□□ 1.17
LRCH3Q96II8 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
LRCH3Q96II8 C9orf163-202ENST00000624034 2573 ntBASIC22.35■■□□□ 1.17
LRCH3Q96II8 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
LRCH3Q96II8 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
LRCH3Q96II8 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
LRCH3Q96II8 FAM197Y1-201ENST00000421178 764 ntBASIC22.35■■□□□ 1.17
LRCH3Q96II8 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC22.35■■□□□ 1.17
LRCH3Q96II8 RPS15-203ENST00000586096 570 ntTSL 2 BASIC22.35■■□□□ 1.17
LRCH3Q96II8 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC22.35■■□□□ 1.17
LRCH3Q96II8 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC22.35■■□□□ 1.17
LRCH3Q96II8 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms