Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF549Q6P9A3 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF549Q6P9A3 GABARAPL3-202ENST00000624044 1851 ntBASIC20.41■□□□□ 0.86
ZNF549Q6P9A3 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF549Q6P9A3 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF549Q6P9A3 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF549Q6P9A3 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF549Q6P9A3 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF549Q6P9A3 AC091799.1-201ENST00000422823 811 ntBASIC20.41■□□□□ 0.86
ZNF549Q6P9A3 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.41■□□□□ 0.86
ZNF549Q6P9A3 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF549Q6P9A3 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF549Q6P9A3 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF549Q6P9A3 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.41■□□□□ 0.86
ZNF549Q6P9A3 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.41■□□□□ 0.86
ZNF549Q6P9A3 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
ZNF549Q6P9A3 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
ZNF549Q6P9A3 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF549Q6P9A3 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF549Q6P9A3 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 AC243732.1-201ENST00000612648 864 ntBASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF549Q6P9A3 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
ZNF549Q6P9A3 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
ZNF549Q6P9A3 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
ZNF549Q6P9A3 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.39■□□□□ 0.86
ZNF549Q6P9A3 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
ZNF549Q6P9A3 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
ZNF549Q6P9A3 AL121603.2-201ENST00000557373 2117 ntBASIC20.39■□□□□ 0.86
ZNF549Q6P9A3 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.39■□□□□ 0.86
ZNF549Q6P9A3 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
ZNF549Q6P9A3 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
ZNF549Q6P9A3 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
ZNF549Q6P9A3 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
ZNF549Q6P9A3 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
ZNF549Q6P9A3 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.39■□□□□ 0.85
ZNF549Q6P9A3 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.39■□□□□ 0.85
ZNF549Q6P9A3 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.39■□□□□ 0.85
ZNF549Q6P9A3 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.39■□□□□ 0.85
ZNF549Q6P9A3 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.39■□□□□ 0.85
ZNF549Q6P9A3 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
ZNF549Q6P9A3 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF549Q6P9A3 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF549Q6P9A3 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
ZNF549Q6P9A3 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.39■□□□□ 0.85
ZNF549Q6P9A3 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.39■□□□□ 0.85
ZNF549Q6P9A3 AC116050.2-201ENST00000612102 1779 ntBASIC20.39■□□□□ 0.85
ZNF549Q6P9A3 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 KRT18P5-201ENST00000436075 1291 ntBASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.38■□□□□ 0.85
ZNF549Q6P9A3 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
ZNF549Q6P9A3 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms