Protein–RNA interactions for Protein: Q9NRQ5

SMCO4, Single-pass membrane and coiled-coil domain-containing protein 4, humanhuman

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4Q9NRQ5 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SMCO4Q9NRQ5 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SMCO4Q9NRQ5 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC16.23■□□□□ 0.19
SMCO4Q9NRQ5 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SMCO4Q9NRQ5 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
SMCO4Q9NRQ5 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SMCO4Q9NRQ5 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
SMCO4Q9NRQ5 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SMCO4Q9NRQ5 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC16.23■□□□□ 0.19
SMCO4Q9NRQ5 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
SMCO4Q9NRQ5 AC026471.6-201ENST00000622954 1905 ntBASIC16.23■□□□□ 0.19
SMCO4Q9NRQ5 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SMCO4Q9NRQ5 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SMCO4Q9NRQ5 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC16.23■□□□□ 0.19
SMCO4Q9NRQ5 ERF-202ENST00000440177 2032 ntTSL 2 BASIC16.23■□□□□ 0.19
SMCO4Q9NRQ5 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.23■□□□□ 0.19
SMCO4Q9NRQ5 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SMCO4Q9NRQ5 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 AC021231.2-201ENST00000594613 730 ntBASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SMCO4Q9NRQ5 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SMCO4Q9NRQ5 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SMCO4Q9NRQ5 AP000997.3-201ENST00000623333 2250 ntBASIC16.21■□□□□ 0.19
SMCO4Q9NRQ5 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
SMCO4Q9NRQ5 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC16.21■□□□□ 0.19
SMCO4Q9NRQ5 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.21■□□□□ 0.19
SMCO4Q9NRQ5 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SMCO4Q9NRQ5 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SMCO4Q9NRQ5 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
SMCO4Q9NRQ5 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SMCO4Q9NRQ5 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC16.21■□□□□ 0.19
SMCO4Q9NRQ5 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC16.21■□□□□ 0.19
SMCO4Q9NRQ5 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SMCO4Q9NRQ5 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SMCO4Q9NRQ5 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SMCO4Q9NRQ5 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.21■□□□□ 0.19
SMCO4Q9NRQ5 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SMCO4Q9NRQ5 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SMCO4Q9NRQ5 PCDHB18P-201ENST00000524813 2368 ntBASIC16.21■□□□□ 0.19
SMCO4Q9NRQ5 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
SMCO4Q9NRQ5 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SMCO4Q9NRQ5 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SMCO4Q9NRQ5 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 DUX4L29-201ENST00000425409 679 ntBASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 BOD1-206ENST00000480951 814 ntTSL 2 BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 SSSCA1-AS1-201ENST00000567594 614 ntBASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SMCO4Q9NRQ5 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC16.19■□□□□ 0.18
SMCO4Q9NRQ5 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SMCO4Q9NRQ5 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC16.19■□□□□ 0.18
SMCO4Q9NRQ5 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC16.19■□□□□ 0.18
SMCO4Q9NRQ5 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.19■□□□□ 0.18
SMCO4Q9NRQ5 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SMCO4Q9NRQ5 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SMCO4Q9NRQ5 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
SMCO4Q9NRQ5 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
SMCO4Q9NRQ5 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SMCO4Q9NRQ5 AC018755.3-202ENST00000596210 929 ntBASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms