Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.45■□□□□ 0.86
TRIM39Q9HCM9 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.44■□□□□ 0.86
TRIM39Q9HCM9 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
TRIM39Q9HCM9 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM39Q9HCM9 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM39Q9HCM9 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM39Q9HCM9 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM39Q9HCM9 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.44■□□□□ 0.86
TRIM39Q9HCM9 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM39Q9HCM9 AC105036.2-201ENST00000569468 176 ntBASIC20.44■□□□□ 0.86
TRIM39Q9HCM9 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.44■□□□□ 0.86
TRIM39Q9HCM9 FEM1AP4-201ENST00000443167 1987 ntBASIC20.44■□□□□ 0.86
TRIM39Q9HCM9 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.44■□□□□ 0.86
TRIM39Q9HCM9 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.44■□□□□ 0.86
TRIM39Q9HCM9 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM39Q9HCM9 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
TRIM39Q9HCM9 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.44■□□□□ 0.86
TRIM39Q9HCM9 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM39Q9HCM9 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
TRIM39Q9HCM9 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM39Q9HCM9 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
TRIM39Q9HCM9 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM39Q9HCM9 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
TRIM39Q9HCM9 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM39Q9HCM9 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM39Q9HCM9 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM39Q9HCM9 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM39Q9HCM9 HLA-L-209ENST00000420110 1011 ntBASIC20.43■□□□□ 0.86
TRIM39Q9HCM9 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM39Q9HCM9 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.43■□□□□ 0.86
TRIM39Q9HCM9 AL109923.1-201ENST00000618799 583 ntBASIC20.43■□□□□ 0.86
TRIM39Q9HCM9 AL049796.1-201ENST00000565336 1766 ntBASIC20.43■□□□□ 0.86
TRIM39Q9HCM9 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM39Q9HCM9 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.43■□□□□ 0.86
TRIM39Q9HCM9 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM39Q9HCM9 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM39Q9HCM9 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM39Q9HCM9 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM39Q9HCM9 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRIM39Q9HCM9 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM39Q9HCM9 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM39Q9HCM9 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM39Q9HCM9 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM39Q9HCM9 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM39Q9HCM9 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
TRIM39Q9HCM9 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM39Q9HCM9 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM39Q9HCM9 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
TRIM39Q9HCM9 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM39Q9HCM9 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRIM39Q9HCM9 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM39Q9HCM9 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM39Q9HCM9 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.41■□□□□ 0.86
TRIM39Q9HCM9 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM39Q9HCM9 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.41■□□□□ 0.86
TRIM39Q9HCM9 AC026310.3-201ENST00000625186 2373 ntBASIC20.41■□□□□ 0.86
TRIM39Q9HCM9 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM39Q9HCM9 TSPY6P-201ENST00000448518 926 ntBASIC20.41■□□□□ 0.86
TRIM39Q9HCM9 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.41■□□□□ 0.86
TRIM39Q9HCM9 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM39Q9HCM9 AC104771.1-201ENST00000603335 964 ntBASIC20.41■□□□□ 0.86
TRIM39Q9HCM9 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
TRIM39Q9HCM9 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM39Q9HCM9 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
TRIM39Q9HCM9 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.41■□□□□ 0.86
TRIM39Q9HCM9 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM39Q9HCM9 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.41■□□□□ 0.86
TRIM39Q9HCM9 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM39Q9HCM9 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM39Q9HCM9 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM39Q9HCM9 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.4■□□□□ 0.86
TRIM39Q9HCM9 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM39Q9HCM9 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM39Q9HCM9 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
TRIM39Q9HCM9 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
TRIM39Q9HCM9 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.4■□□□□ 0.86
TRIM39Q9HCM9 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.4■□□□□ 0.86
TRIM39Q9HCM9 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
TRIM39Q9HCM9 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.4■□□□□ 0.86
TRIM39Q9HCM9 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM39Q9HCM9 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.4■□□□□ 0.86
TRIM39Q9HCM9 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.4■□□□□ 0.86
TRIM39Q9HCM9 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.4■□□□□ 0.86
TRIM39Q9HCM9 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
TRIM39Q9HCM9 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
TRIM39Q9HCM9 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.39■□□□□ 0.85
TRIM39Q9HCM9 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM39Q9HCM9 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM39Q9HCM9 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
TRIM39Q9HCM9 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM39Q9HCM9 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM39Q9HCM9 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM39Q9HCM9 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.39■□□□□ 0.85
TRIM39Q9HCM9 AC093787.1-201ENST00000450396 207 ntBASIC20.39■□□□□ 0.85
TRIM39Q9HCM9 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
TRIM39Q9HCM9 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
TRIM39Q9HCM9 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms