Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CSPG4Q6UVK1 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
CSPG4Q6UVK1 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CSPG4Q6UVK1 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.07■□□□□ 0.32
CSPG4Q6UVK1 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CSPG4Q6UVK1 C11orf96-202ENST00000528572 1834 ntBASIC17.06■□□□□ 0.32
CSPG4Q6UVK1 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CSPG4Q6UVK1 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
CSPG4Q6UVK1 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CSPG4Q6UVK1 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CSPG4Q6UVK1 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CSPG4Q6UVK1 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CSPG4Q6UVK1 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC17.06■□□□□ 0.32
CSPG4Q6UVK1 AC010542.4-201ENST00000563151 1910 ntBASIC17.06■□□□□ 0.32
CSPG4Q6UVK1 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.06■□□□□ 0.32
CSPG4Q6UVK1 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CSPG4Q6UVK1 FAM21FP-204ENST00000608637 956 ntBASIC17.06■□□□□ 0.32
CSPG4Q6UVK1 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CSPG4Q6UVK1 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CSPG4Q6UVK1 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC17.06■□□□□ 0.32
CSPG4Q6UVK1 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CSPG4Q6UVK1 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CSPG4Q6UVK1 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.06■□□□□ 0.32
CSPG4Q6UVK1 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CSPG4Q6UVK1 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 AC091799.1-201ENST00000422823 811 ntBASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 CDV3P1-201ENST00000471403 739 ntBASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CSPG4Q6UVK1 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 AC026471.6-201ENST00000622954 1905 ntBASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 AP003071.4-201ENST00000562276 1284 ntBASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CSPG4Q6UVK1 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CSPG4Q6UVK1 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CSPG4Q6UVK1 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.03■□□□□ 0.32
CSPG4Q6UVK1 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.03■□□□□ 0.32
CSPG4Q6UVK1 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CSPG4Q6UVK1 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC17.03■□□□□ 0.32
CSPG4Q6UVK1 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CSPG4Q6UVK1 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CSPG4Q6UVK1 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC17.03■□□□□ 0.32
CSPG4Q6UVK1 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CSPG4Q6UVK1 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CSPG4Q6UVK1 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.03■□□□□ 0.32
CSPG4Q6UVK1 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.03■□□□□ 0.32
CSPG4Q6UVK1 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
CSPG4Q6UVK1 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC17.03■□□□□ 0.32
CSPG4Q6UVK1 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC17.03■□□□□ 0.32
CSPG4Q6UVK1 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.03■□□□□ 0.32
CSPG4Q6UVK1 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.03■□□□□ 0.32
CSPG4Q6UVK1 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms