Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 LINC01023-201ENST00000606054 436 ntBASIC23.09■■□□□ 1.29
PGK1P00558 AL023875.1-201ENST00000640777 796 ntBASIC23.09■■□□□ 1.29
PGK1P00558 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
PGK1P00558 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
PGK1P00558 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
PGK1P00558 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PGK1P00558 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
PGK1P00558 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PGK1P00558 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
PGK1P00558 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
PGK1P00558 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC23.08■■□□□ 1.29
PGK1P00558 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC23.08■■□□□ 1.29
PGK1P00558 CASK-201ENST00000378154 2494 ntTSL 5 BASIC23.08■■□□□ 1.29
PGK1P00558 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
PGK1P00558 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
PGK1P00558 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
PGK1P00558 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PGK1P00558 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PGK1P00558 AC012618.2-201ENST00000428058 849 ntBASIC23.08■■□□□ 1.29
PGK1P00558 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
PGK1P00558 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
PGK1P00558 LY6E-205ENST00000519611 635 ntTSL 3 BASIC23.08■■□□□ 1.29
PGK1P00558 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC23.08■■□□□ 1.29
PGK1P00558 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC23.08■■□□□ 1.29
PGK1P00558 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC23.08■■□□□ 1.29
PGK1P00558 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
PGK1P00558 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC23.08■■□□□ 1.29
PGK1P00558 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
PGK1P00558 AC116050.2-201ENST00000612102 1779 ntBASIC23.08■■□□□ 1.29
PGK1P00558 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PGK1P00558 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
PGK1P00558 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
PGK1P00558 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC23.08■■□□□ 1.28
PGK1P00558 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
PGK1P00558 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.28
PGK1P00558 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.28
PGK1P00558 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
PGK1P00558 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PGK1P00558 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PGK1P00558 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC23.07■■□□□ 1.28
PGK1P00558 AC127496.7-201ENST00000625110 1798 ntBASIC23.07■■□□□ 1.28
PGK1P00558 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
PGK1P00558 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PGK1P00558 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
PGK1P00558 SERF2-207ENST00000409614 582 ntTSL 2 BASIC23.07■■□□□ 1.28
PGK1P00558 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PGK1P00558 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC23.07■■□□□ 1.28
PGK1P00558 AC124016.1-201ENST00000609552 612 ntBASIC23.07■■□□□ 1.28
PGK1P00558 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC23.07■■□□□ 1.28
PGK1P00558 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
PGK1P00558 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC23.07■■□□□ 1.28
PGK1P00558 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PGK1P00558 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC23.06■■□□□ 1.28
PGK1P00558 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC23.06■■□□□ 1.28
PGK1P00558 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
PGK1P00558 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC23.06■■□□□ 1.28
PGK1P00558 KRT18P21-201ENST00000515767 1272 ntBASIC23.06■■□□□ 1.28
PGK1P00558 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC23.06■■□□□ 1.28
PGK1P00558 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
PGK1P00558 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC23.06■■□□□ 1.28
PGK1P00558 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
PGK1P00558 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC23.06■■□□□ 1.28
PGK1P00558 AC010331.1-201ENST00000611423 582 ntBASIC23.06■■□□□ 1.28
PGK1P00558 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
PGK1P00558 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC23.06■■□□□ 1.28
PGK1P00558 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
PGK1P00558 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PGK1P00558 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PGK1P00558 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PGK1P00558 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
PGK1P00558 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
PGK1P00558 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC23.05■■□□□ 1.28
PGK1P00558 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC23.05■■□□□ 1.28
PGK1P00558 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC23.04■■□□□ 1.28
PGK1P00558 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PGK1P00558 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PGK1P00558 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC23.04■■□□□ 1.28
PGK1P00558 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PGK1P00558 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
PGK1P00558 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
PGK1P00558 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC23.04■■□□□ 1.28
PGK1P00558 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC23.04■■□□□ 1.28
PGK1P00558 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC23.04■■□□□ 1.28
PGK1P00558 C9orf163-202ENST00000624034 2573 ntBASIC23.04■■□□□ 1.28
PGK1P00558 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PGK1P00558 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PGK1P00558 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC23.04■■□□□ 1.28
PGK1P00558 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PGK1P00558 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
PGK1P00558 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
PGK1P00558 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
PGK1P00558 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PGK1P00558 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC23.03■■□□□ 1.28
PGK1P00558 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PGK1P00558 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC23.03■■□□□ 1.28
PGK1P00558 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PGK1P00558 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
PGK1P00558 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PGK1P00558 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
PGK1P00558 GGT1-206ENST00000404223 952 ntTSL 2 BASIC23.03■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms