Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 RBM39-223ENST00000463004 4580 ntTSL 512.51□□□□□ -0.413e-8■■■□□ 14.9
DDX55Q8NHQ9 RBM39-202ENST00000338163 2792 ntTSL 212.35□□□□□ -0.433e-8■■■□□ 14.9
DDX55Q8NHQ9 RBM39-206ENST00000403542 2883 ntTSL 212.28□□□□□ -0.443e-8■■■□□ 14.9
DDX55Q8NHQ9 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.25□□□□□ -1.733e-8■■■□□ 14.9
DDX55Q8NHQ9 RBM39-221ENST00000461283 2415 ntTSL 53.24□□□□□ -1.893e-8■■■□□ 14.9
DDX55Q8NHQ9 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC28.72■■■□□ 2.191e-7■■■□□ 14.9
DDX55Q8NHQ9 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC26.5■■□□□ 1.831e-7■■■□□ 14.9
DDX55Q8NHQ9 TMEM165-205ENST00000508404 1657 ntTSL 223.88■■□□□ 1.411e-7■■■□□ 14.9
DDX55Q8NHQ9 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.391e-7■■■□□ 14.9
DDX55Q8NHQ9 DUT-205ENST00000558813 769 ntTSL 2 BASIC23.59■■□□□ 1.371e-7■■■□□ 14.9
DDX55Q8NHQ9 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC23.22■■□□□ 1.311e-7■■■□□ 14.9
DDX55Q8NHQ9 CDIPT-205ENST00000563893 2253 ntTSL 522.96■■□□□ 1.271e-7■■■□□ 14.9
DDX55Q8NHQ9 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.261e-7■■■□□ 14.9
DDX55Q8NHQ9 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.261e-7■■■□□ 14.9
DDX55Q8NHQ9 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC22.34■■□□□ 1.171e-7■■■□□ 14.9
DDX55Q8NHQ9 DUT-206ENST00000558978 1171 ntTSL 322.29■■□□□ 1.161e-7■■■□□ 14.9
DDX55Q8NHQ9 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.031e-7■■■□□ 14.9
DDX55Q8NHQ9 CDIPT-208ENST00000567459 434 ntTSL 319.87■□□□□ 0.771e-7■■■□□ 14.9
DDX55Q8NHQ9 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.751e-7■■■□□ 14.9
DDX55Q8NHQ9 TMEM214-207ENST00000444135 919 ntTSL 518.77■□□□□ 0.61e-7■■■□□ 14.9
DDX55Q8NHQ9 DSTN-202ENST00000449141 795 ntTSL 318.43■□□□□ 0.541e-7■■■□□ 14.9
DDX55Q8NHQ9 TMEM165-206ENST00000508561 756 ntTSL 517.18■□□□□ 0.341e-7■■■□□ 14.9
DDX55Q8NHQ9 DUT-208ENST00000559540 1441 ntTSL 2 BASIC16.45■□□□□ 0.221e-7■■■□□ 14.9
DDX55Q8NHQ9 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC16.27■□□□□ 0.191e-7■■■□□ 14.9
DDX55Q8NHQ9 RPL21-207ENST00000473558 551 ntTSL 216.14■□□□□ 0.171e-7■■■□□ 14.9
DDX55Q8NHQ9 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.031e-7■■■□□ 14.9
DDX55Q8NHQ9 ATP6V0E2-208ENST00000483478 475 ntTSL 314.8□□□□□ -0.041e-6■■■□□ 14.9
DDX55Q8NHQ9 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.11e-7■■■□□ 14.9
DDX55Q8NHQ9 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.121e-7■■■□□ 14.9
DDX55Q8NHQ9 HACD3-201ENST00000261875 3228 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.121e-7■■■□□ 14.9
DDX55Q8NHQ9 RPL21-206ENST00000466550 756 ntTSL 214.2□□□□□ -0.145e-20■■■□□ 14.9
DDX55Q8NHQ9 TMEM165-203ENST00000506103 572 ntTSL 314.02□□□□□ -0.171e-7■■■□□ 14.9
DDX55Q8NHQ9 TMEM165-212ENST00000608091 1567 ntTSL 313.67□□□□□ -0.221e-7■■■□□ 14.9
DDX55Q8NHQ9 NCAPG2-201ENST00000356309 3930 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.381e-7■■■□□ 14.9
DDX55Q8NHQ9 ATP6V0E2-210ENST00000495408 569 ntTSL 411.74□□□□□ -0.531e-6■■■□□ 14.9
DDX55Q8NHQ9 SND1-201ENST00000354725 3476 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.561e-6■■■□□ 14.9
DDX55Q8NHQ9 NCAPG2-203ENST00000409423 3957 ntAPPRIS P1 TSL 2 BASIC11.04□□□□□ -0.641e-7■■■□□ 14.9
DDX55Q8NHQ9 TMEM165-210ENST00000514904 1522 ntTSL 210.76□□□□□ -0.691e-7■■■□□ 14.9
DDX55Q8NHQ9 NOL11-209ENST00000583108 2071 ntTSL 210.45□□□□□ -0.741e-7■■■□□ 14.9
DDX55Q8NHQ9 NOL11-201ENST00000253247 2947 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.811e-7■■■□□ 14.9
DDX55Q8NHQ9 NCAPG2-204ENST00000432615 4134 ntTSL 59.75□□□□□ -0.851e-7■■■□□ 14.9
DDX55Q8NHQ9 FOXM1-201ENST00000342628 3475 ntTSL 1 (best) BASIC9.61□□□□□ -0.871e-7■■■□□ 14.9
DDX55Q8NHQ9 FOXM1-206ENST00000536066 2518 ntTSL 1 (best)9.58□□□□□ -0.881e-7■■■□□ 14.9
DDX55Q8NHQ9 NCAPG2-205ENST00000441982 2926 ntTSL 29.36□□□□□ -0.911e-7■■■□□ 14.9
DDX55Q8NHQ9 TMEM165-211ENST00000515591 1786 ntTSL 28.86□□□□□ -0.991e-7■■■□□ 14.9
DDX55Q8NHQ9 NOL11-206ENST00000581375 2448 ntTSL 28.25□□□□□ -1.091e-7■■■□□ 14.9
DDX55Q8NHQ9 ATP6V0E2-209ENST00000490092 501 ntTSL 48.23□□□□□ -1.091e-6■■■□□ 14.9
DDX55Q8NHQ9 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC7.13□□□□□ -1.271e-7■■■□□ 14.9
DDX55Q8NHQ9 NOL11-210ENST00000584032 612 ntTSL 26.3□□□□□ -1.41e-7■■■□□ 14.9
DDX55Q8NHQ9 LMNB1-208ENST00000504788 1801 ntTSL 25.92□□□□□ -1.462e-18■■■□□ 14.9
DDX55Q8NHQ9 NOL11-208ENST00000583021 443 ntTSL 25.47□□□□□ -1.531e-7■■■□□ 14.9
DDX55Q8NHQ9 C5orf15-201ENST00000231512 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.272e-7■■■□□ 14.9
DDX55Q8NHQ9 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.513e-10■■■□□ 14.9
DDX55Q8NHQ9 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.12■□□□□ 0.493e-10■■■□□ 14.9
DDX55Q8NHQ9 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC17.06■□□□□ 0.323e-10■■■□□ 14.9
DDX55Q8NHQ9 TRAF4-206ENST00000454852 672 ntTSL 313.26□□□□□ -0.291e-6■■■□□ 14.9
DDX55Q8NHQ9 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC16.35■□□□□ 0.212e-7■■■□□ 14.8
DDX55Q8NHQ9 AZGP1-201ENST00000292401 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.062e-7■■■□□ 14.8
DDX55Q8NHQ9 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC27.47■■□□□ 1.992e-7■■■□□ 14.8
DDX55Q8NHQ9 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC27.47■■□□□ 1.992e-7■■■□□ 14.8
DDX55Q8NHQ9 C19orf60-205ENST00000597371 1081 ntTSL 326.87■■□□□ 1.892e-7■■■□□ 14.8
DDX55Q8NHQ9 C19orf60-206ENST00000598375 1792 ntTSL 525.2■■□□□ 1.622e-7■■■□□ 14.8
DDX55Q8NHQ9 C19orf60-207ENST00000600997 2275 ntTSL 222.3■■□□□ 1.162e-7■■■□□ 14.8
DDX55Q8NHQ9 C19orf60-208ENST00000601736 491 ntTSL 221.06■□□□□ 0.962e-7■■■□□ 14.8
DDX55Q8NHQ9 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.186e-7■■■□□ 14.8
DDX55Q8NHQ9 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.226e-7■■■□□ 14.8
DDX55Q8NHQ9 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.846e-7■■■□□ 14.8
DDX55Q8NHQ9 SF1-206ENST00000413725 843 ntTSL 215.66■□□□□ 0.16e-7■■■□□ 14.8
DDX55Q8NHQ9 SF1-210ENST00000443908 767 ntTSL 315.66■□□□□ 0.16e-7■■■□□ 14.8
DDX55Q8NHQ9 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC28.99■■■□□ 2.232e-9■■■□□ 14.8
DDX55Q8NHQ9 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.352e-9■■■□□ 14.8
DDX55Q8NHQ9 ARHGDIA-205ENST00000579121 637 ntTSL 319.48■□□□□ 0.712e-9■■■□□ 14.8
DDX55Q8NHQ9 GPX4-205ENST00000587932 274 ntTSL 234.68■■■■□ 3.142e-11■■■□□ 14.8
DDX55Q8NHQ9 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.745e-14■■■□□ 14.8
DDX55Q8NHQ9 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC23.63■■□□□ 1.375e-7■■■□□ 14.8
DDX55Q8NHQ9 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC22.11■■□□□ 1.132e-9■■■□□ 14.8
DDX55Q8NHQ9 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.042e-9■■■□□ 14.8
DDX55Q8NHQ9 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC15.24■□□□□ 0.032e-9■■■□□ 14.8
DDX55Q8NHQ9 AGRN-203ENST00000461111 3385 ntTSL 1 (best)13.13□□□□□ -0.312e-9■■■□□ 14.8
DDX55Q8NHQ9 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.76■□□□□ 0.751e-21■■■□□ 14.8
DDX55Q8NHQ9 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC16.19■□□□□ 0.181e-21■■■□□ 14.8
DDX55Q8NHQ9 LMNA-206ENST00000368300 3190 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.271e-21■■■□□ 14.8
DDX55Q8NHQ9 SRRM2-217ENST00000573692 459 ntTSL 320.54■□□□□ 0.885e-14■■■□□ 14.8
DDX55Q8NHQ9 SRRM2-218ENST00000574331 1759 ntTSL 220.05■□□□□ 0.85e-14■■■□□ 14.8
DDX55Q8NHQ9 SRRM2-202ENST00000570539 431 ntTSL 212.83□□□□□ -0.365e-14■■■□□ 14.8
DDX55Q8NHQ9 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.058e-72■■■□□ 14.8
DDX55Q8NHQ9 PABPC1-219ENST00000522387 2331 ntTSL 2 BASIC14.49□□□□□ -0.098e-72■■■□□ 14.8
DDX55Q8NHQ9 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC14.45□□□□□ -0.18e-72■■■□□ 14.8
DDX55Q8NHQ9 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC38.18■■■■□ 3.77e-6■■■□□ 14.8
DDX55Q8NHQ9 ATXN7L3-205ENST00000587097 1341 ntTSL 537.49■■■■□ 3.593e-8■■■□□ 14.8
DDX55Q8NHQ9 PKDCC-202ENST00000401498 1550 ntTSL 536.1■■■■□ 3.373e-8■■■□□ 14.8
DDX55Q8NHQ9 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC33.86■■■■□ 3.011e-10■■■□□ 14.8
DDX55Q8NHQ9 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC27.26■■□□□ 1.952e-6■■■□□ 14.8
DDX55Q8NHQ9 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC26.05■■□□□ 1.767e-6■■■□□ 14.8
DDX55Q8NHQ9 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC25.72■■□□□ 1.717e-6■■■□□ 14.8
DDX55Q8NHQ9 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC24.85■■□□□ 1.573e-8■■■□□ 14.8
DDX55Q8NHQ9 C7orf26-204ENST00000445375 675 ntTSL 524.78■■□□□ 1.567e-6■■■□□ 14.8
DDX55Q8NHQ9 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.533e-8■■■□□ 14.8
DDX55Q8NHQ9 TSC22D4-206ENST00000496728 837 ntTSL 324.33■■□□□ 1.492e-8■■■□□ 14.8
DDX55Q8NHQ9 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC24.25■■□□□ 1.473e-8■■■□□ 14.8
Retrieved 100 of 15,504 protein–RNA pairs in 140.2 ms