Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.51■□□□□ 0.87
NUDCD3Q8IVD9 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NUDCD3Q8IVD9 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUDCD3Q8IVD9 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUDCD3Q8IVD9 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUDCD3Q8IVD9 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
NUDCD3Q8IVD9 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.5■□□□□ 0.87
NUDCD3Q8IVD9 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.5■□□□□ 0.87
NUDCD3Q8IVD9 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUDCD3Q8IVD9 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.5■□□□□ 0.87
NUDCD3Q8IVD9 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NUDCD3Q8IVD9 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUDCD3Q8IVD9 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUDCD3Q8IVD9 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUDCD3Q8IVD9 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.5■□□□□ 0.87
NUDCD3Q8IVD9 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NUDCD3Q8IVD9 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NUDCD3Q8IVD9 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUDCD3Q8IVD9 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.49■□□□□ 0.87
NUDCD3Q8IVD9 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUDCD3Q8IVD9 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.49■□□□□ 0.87
NUDCD3Q8IVD9 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUDCD3Q8IVD9 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUDCD3Q8IVD9 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NUDCD3Q8IVD9 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUDCD3Q8IVD9 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NUDCD3Q8IVD9 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
NUDCD3Q8IVD9 AL035685.1-201ENST00000636663 812 ntBASIC20.49■□□□□ 0.87
NUDCD3Q8IVD9 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUDCD3Q8IVD9 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.49■□□□□ 0.87
NUDCD3Q8IVD9 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.49■□□□□ 0.87
NUDCD3Q8IVD9 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUDCD3Q8IVD9 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
NUDCD3Q8IVD9 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.49■□□□□ 0.87
NUDCD3Q8IVD9 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.48■□□□□ 0.87
NUDCD3Q8IVD9 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.48■□□□□ 0.87
NUDCD3Q8IVD9 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NUDCD3Q8IVD9 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NUDCD3Q8IVD9 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.48■□□□□ 0.87
NUDCD3Q8IVD9 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.48■□□□□ 0.87
NUDCD3Q8IVD9 AC009237.3-201ENST00000393279 1427 ntBASIC20.48■□□□□ 0.87
NUDCD3Q8IVD9 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NUDCD3Q8IVD9 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NUDCD3Q8IVD9 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NUDCD3Q8IVD9 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.48■□□□□ 0.87
NUDCD3Q8IVD9 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
NUDCD3Q8IVD9 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.48■□□□□ 0.87
NUDCD3Q8IVD9 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NUDCD3Q8IVD9 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NUDCD3Q8IVD9 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NUDCD3Q8IVD9 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NUDCD3Q8IVD9 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NUDCD3Q8IVD9 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.47■□□□□ 0.87
NUDCD3Q8IVD9 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.47■□□□□ 0.87
NUDCD3Q8IVD9 MIR4466-201ENST00000606121 54 ntBASIC20.47■□□□□ 0.87
NUDCD3Q8IVD9 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
NUDCD3Q8IVD9 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NUDCD3Q8IVD9 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NUDCD3Q8IVD9 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NUDCD3Q8IVD9 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NUDCD3Q8IVD9 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.47■□□□□ 0.87
NUDCD3Q8IVD9 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.47■□□□□ 0.87
NUDCD3Q8IVD9 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 AC055733.4-201ENST00000638462 1354 ntBASIC20.46■□□□□ 0.87
NUDCD3Q8IVD9 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.87
NUDCD3Q8IVD9 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.45■□□□□ 0.86
NUDCD3Q8IVD9 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.45■□□□□ 0.86
NUDCD3Q8IVD9 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NUDCD3Q8IVD9 AC099778.1-201ENST00000568593 1911 ntBASIC20.45■□□□□ 0.86
NUDCD3Q8IVD9 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
NUDCD3Q8IVD9 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NUDCD3Q8IVD9 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NUDCD3Q8IVD9 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NUDCD3Q8IVD9 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
NUDCD3Q8IVD9 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
NUDCD3Q8IVD9 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.45■□□□□ 0.86
NUDCD3Q8IVD9 AC133561.4-201ENST00000566112 224 ntBASIC20.45■□□□□ 0.86
NUDCD3Q8IVD9 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NUDCD3Q8IVD9 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms