Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC18.16■□□□□ 0.5
SOX2P48431 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC18.16■□□□□ 0.5
SOX2P48431 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
SOX2P48431 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SOX2P48431 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SOX2P48431 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SOX2P48431 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SOX2P48431 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
SOX2P48431 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
SOX2P48431 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SOX2P48431 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SOX2P48431 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SOX2P48431 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SOX2P48431 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
SOX2P48431 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.15■□□□□ 0.5
SOX2P48431 AC020907.5-201ENST00000624372 1936 ntBASIC18.15■□□□□ 0.5
SOX2P48431 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX2P48431 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.15■□□□□ 0.5
SOX2P48431 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SOX2P48431 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
SOX2P48431 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.15■□□□□ 0.5
SOX2P48431 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.15■□□□□ 0.5
SOX2P48431 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.15■□□□□ 0.5
SOX2P48431 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.15■□□□□ 0.5
SOX2P48431 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SOX2P48431 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX2P48431 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX2P48431 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX2P48431 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX2P48431 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX2P48431 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SOX2P48431 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.15■□□□□ 0.5
SOX2P48431 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX2P48431 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX2P48431 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.15■□□□□ 0.5
SOX2P48431 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
SOX2P48431 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX2P48431 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX2P48431 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SOX2P48431 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.14■□□□□ 0.5
SOX2P48431 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SOX2P48431 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
SOX2P48431 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.14■□□□□ 0.5
SOX2P48431 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
SOX2P48431 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SOX2P48431 FP700111.2-201ENST00000619190 1892 ntBASIC18.14■□□□□ 0.49
SOX2P48431 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SOX2P48431 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SOX2P48431 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SOX2P48431 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SOX2P48431 BX842568.3-201ENST00000418104 571 ntBASIC18.14■□□□□ 0.49
SOX2P48431 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC18.14■□□□□ 0.49
SOX2P48431 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC18.14■□□□□ 0.49
SOX2P48431 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC18.14■□□□□ 0.49
SOX2P48431 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SOX2P48431 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.14■□□□□ 0.49
SOX2P48431 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
SOX2P48431 AC112907.3-201ENST00000577781 2400 ntBASIC18.14■□□□□ 0.49
SOX2P48431 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
SOX2P48431 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
SOX2P48431 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SOX2P48431 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
SOX2P48431 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SOX2P48431 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SOX2P48431 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SOX2P48431 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SOX2P48431 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SOX2P48431 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SOX2P48431 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SOX2P48431 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SOX2P48431 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SOX2P48431 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SOX2P48431 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SOX2P48431 AC126544.1-201ENST00000580842 1059 ntBASIC18.13■□□□□ 0.49
SOX2P48431 MIR4767-201ENST00000582827 78 ntBASIC18.13■□□□□ 0.49
SOX2P48431 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SOX2P48431 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.13■□□□□ 0.49
SOX2P48431 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.13■□□□□ 0.49
SOX2P48431 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
SOX2P48431 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SOX2P48431 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.13■□□□□ 0.49
SOX2P48431 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
SOX2P48431 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SOX2P48431 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SOX2P48431 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SOX2P48431 AC138932.1-201ENST00000534164 6830 ntBASIC18.12■□□□□ 0.49
SOX2P48431 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SOX2P48431 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SOX2P48431 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
SOX2P48431 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.12■□□□□ 0.49
SOX2P48431 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
SOX2P48431 AC007952.6-201ENST00000573168 2673 ntBASIC18.12■□□□□ 0.49
SOX2P48431 AC003957.1-201ENST00000625108 2673 ntBASIC18.12■□□□□ 0.49
SOX2P48431 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SOX2P48431 AC133561.4-201ENST00000566112 224 ntBASIC18.12■□□□□ 0.49
SOX2P48431 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC18.12■□□□□ 0.49
SOX2P48431 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SOX2P48431 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SOX2P48431 AC009237.3-201ENST00000393279 1427 ntBASIC18.12■□□□□ 0.49
SOX2P48431 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms