Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PACS1-213ENST00000533756 578 ntTSL 413.72□□□□□ -0.213e-6■■■□□ 17.5
YBX3P16989 STOM-202ENST00000347359 870 ntTSL 2 BASIC22.29■■□□□ 1.162e-6■■■□□ 17.5
YBX3P16989 STOM-203ENST00000538954 1257 ntTSL 5 BASIC21.1■□□□□ 0.972e-6■■■□□ 17.5
YBX3P16989 STOM-201ENST00000286713 3010 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.072e-6■■■□□ 17.5
YBX3P16989 DVL2-208ENST00000575086 900 ntTSL 327.62■■■□□ 2.015e-10■■■□□ 17.5
YBX3P16989 HSPBP1-204ENST00000585927 666 ntTSL 533.87■■■■□ 3.013e-7■■■□□ 17.5
YBX3P16989 HSPBP1-203ENST00000585698 557 ntTSL 233.19■■■□□ 2.93e-7■■■□□ 17.5
YBX3P16989 HSPBP1-209ENST00000593263 884 ntTSL 232.26■■■□□ 2.753e-7■■■□□ 17.5
YBX3P16989 HSPBP1-207ENST00000587959 424 ntTSL 530.81■■■□□ 2.523e-7■■■□□ 17.5
YBX3P16989 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.183e-7■■■□□ 17.5
YBX3P16989 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.183e-7■■■□□ 17.5
YBX3P16989 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.163e-7■■■□□ 17.5
YBX3P16989 HSPBP1-208ENST00000588971 696 ntTSL 328.45■■■□□ 2.143e-7■■■□□ 17.5
YBX3P16989 HSPBP1-205ENST00000587551 536 ntTSL 225.13■■□□□ 1.613e-7■■■□□ 17.5
YBX3P16989 ZMYND8-202ENST00000311275 5362 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.681e-7■■■□□ 17.5
YBX3P16989 ZMYND8-205ENST00000360911 4991 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.731e-7■■■□□ 17.5
YBX3P16989 ZMYND8-217ENST00000536340 5273 ntAPPRIS ALT2 TSL 2 BASIC10.35□□□□□ -0.751e-7■■■□□ 17.5
YBX3P16989 ZMYND8-204ENST00000355972 5542 ntAPPRIS ALT2 TSL 2 BASIC9.66□□□□□ -0.861e-7■■■□□ 17.5
YBX3P16989 ZMYND8-219ENST00000611941 5090 ntAPPRIS ALT2 TSL 1 (best) BASIC9.17□□□□□ -0.941e-7■■■□□ 17.5
YBX3P16989 ZMYND8-207ENST00000396281 5511 ntAPPRIS ALT2 TSL 2 BASIC8.68□□□□□ -1.021e-7■■■□□ 17.5
YBX3P16989 ZMYND8-221ENST00000619049 4027 ntTSL 5 BASIC8.42□□□□□ -1.061e-7■■■□□ 17.5
YBX3P16989 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.091e-7■■■□□ 17.5
YBX3P16989 ZMYND8-211ENST00000446994 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC7.67□□□□□ -1.181e-7■■■□□ 17.5
YBX3P16989 RSL1D1-211ENST00000574287 485 ntTSL 27.4□□□□□ -1.223e-10■■■□□ 17.5
YBX3P16989 USO1-201ENST00000264904 4135 ntTSL 2 BASIC13.3□□□□□ -0.285e-9■■■□□ 17.5
YBX3P16989 USO1-204ENST00000514213 4034 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.615e-9■■■□□ 17.5
YBX3P16989 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.22■□□□□ 0.035e-9■■■□□ 17.5
YBX3P16989 ATXN10-201ENST00000252934 3329 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.425e-9■■■□□ 17.5
YBX3P16989 LRPPRC-206ENST00000463456 3549 ntTSL 25.13□□□□□ -1.592e-9■■■□□ 17.5
YBX3P16989 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC20.06■□□□□ 0.81e-11■■■□□ 17.5
YBX3P16989 PDE4DIP-242ENST00000617031 1542 ntTSL 518.98■□□□□ 0.631e-11■■■□□ 17.5
YBX3P16989 PDE4DIP-245ENST00000617527 911 ntTSL 518.73■□□□□ 0.591e-11■■■□□ 17.5
YBX3P16989 PDE4DIP-212ENST00000477941 586 ntTSL 317.9■□□□□ 0.461e-11■■■□□ 17.5
YBX3P16989 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC17.45■□□□□ 0.381e-11■■■□□ 17.5
YBX3P16989 PDE4DIP-233ENST00000533845 376 ntTSL 515□□□□□ -0.011e-11■■■□□ 17.5
YBX3P16989 PDE4DIP-222ENST00000526445 704 ntTSL 415□□□□□ -0.011e-11■■■□□ 17.5
YBX3P16989 PDE4DIP-244ENST00000617454 582 ntTSL 313.82□□□□□ -0.21e-11■■■□□ 17.5
YBX3P16989 PDE4DIP-236ENST00000534536 647 ntTSL 312.59□□□□□ -0.391e-11■■■□□ 17.5
YBX3P16989 PDE4DIP-226ENST00000528129 597 ntTSL 511.03□□□□□ -0.641e-11■■■□□ 17.5
YBX3P16989 PDE4DIP-239ENST00000612094 3451 ntTSL 58.9□□□□□ -0.991e-11■■■□□ 17.5
YBX3P16989 PDE4DIP-208ENST00000464103 1055 ntTSL 5 BASIC8.03□□□□□ -1.121e-11■■■□□ 17.5
YBX3P16989 PDE4DIP-250ENST00000621371 819 ntTSL 35.81□□□□□ -1.481e-11■■■□□ 17.5
YBX3P16989 TMEM106C-206ENST00000547682 491 ntTSL 36.77□□□□□ -1.332e-7■■■□□ 17.5
YBX3P16989 GUCD1-201ENST00000398245 1593 ntTSL 530.04■■■□□ 2.42e-6■■■□□ 17.5
YBX3P16989 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC27.56■■■□□ 25e-6■■■□□ 17.5
YBX3P16989 ANKRD11-204ENST00000378332 1982 ntTSL 224.14■■□□□ 1.455e-6■■■□□ 17.5
YBX3P16989 SUPT5H-210ENST00000598117 859 ntTSL 223.45■■□□□ 1.343e-19■■■□□ 17.5
YBX3P16989 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.142e-7■■■□□ 17.5
YBX3P16989 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.842e-7■■■□□ 17.5
YBX3P16989 SLC29A1-210ENST00000472176 1225 ntTSL 520.23■□□□□ 0.839e-10■■■□□ 17.5
YBX3P16989 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.592e-7■■■□□ 17.5
YBX3P16989 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.532e-7■■■□□ 17.5
YBX3P16989 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.452e-7■■■□□ 17.5
YBX3P16989 ANKRD11-209ENST00000564553 471 ntTSL 317.51■□□□□ 0.398e-6■■■□□ 17.5
YBX3P16989 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.272e-7■■■□□ 17.5
YBX3P16989 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.242e-6■■■□□ 17.5
YBX3P16989 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.212e-7■■■□□ 17.5
YBX3P16989 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.212e-7■■■□□ 17.5
YBX3P16989 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.182e-6■■■□□ 17.5
YBX3P16989 ANKRD11-207ENST00000562816 573 ntTSL 415.97■□□□□ 0.158e-6■■■□□ 17.5
YBX3P16989 ANKRD11-213ENST00000567736 2750 ntTSL 215.55■□□□□ 0.088e-6■■■□□ 17.5
YBX3P16989 ANKRD11-206ENST00000562275 2762 ntTSL 514.18□□□□□ -0.145e-6■■■□□ 17.5
YBX3P16989 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.152e-7■■■□□ 17.5
YBX3P16989 ANKRD11-202ENST00000330736 8342 ntTSL 513.67□□□□□ -0.225e-6■■■□□ 17.5
YBX3P16989 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.275e-6■■■□□ 17.5
YBX3P16989 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.35e-6■■■□□ 17.5
YBX3P16989 SUPT5H-216ENST00000599335 3796 ntTSL 212.88□□□□□ -0.353e-19■■■□□ 17.5
YBX3P16989 SUPT5H-204ENST00000432763 3710 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.43e-19■■■□□ 17.5
YBX3P16989 SUPT5H-203ENST00000402194 3698 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.523e-19■■■□□ 17.5
YBX3P16989 SUPT5H-215ENST00000599117 3902 ntAPPRIS P3 TSL 5 BASIC11.76□□□□□ -0.533e-19■■■□□ 17.5
YBX3P16989 SUPT5H-201ENST00000359191 3770 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.533e-19■■■□□ 17.5
YBX3P16989 GUCD1-213ENST00000621833 3584 ntTSL 1 (best) BASIC11.35□□□□□ -0.592e-6■■■□□ 17.5
YBX3P16989 SUPT5H-213ENST00000598725 3742 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.623e-19■■■□□ 17.5
YBX3P16989 GUCD1-211ENST00000490922 567 ntTSL 310.57□□□□□ -0.722e-6■■■□□ 17.5
YBX3P16989 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.092e-7■■■□□ 17.5
YBX3P16989 DCTD-204ENST00000503182 578 ntTSL 410.75□□□□□ -0.692e-7■■■□□ 17.5
YBX3P16989 PRKAR2A-207ENST00000457914 448 ntTSL 313.86□□□□□ -0.195e-7■■■□□ 17.5
YBX3P16989 SLC7A1-201ENST00000380752 7347 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.491e-6■■■□□ 17.5
YBX3P16989 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.356e-8■■■□□ 17.5
YBX3P16989 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC23.06■■□□□ 1.286e-8■■■□□ 17.5
YBX3P16989 MRPL3-209ENST00000511168 1377 ntTSL 222.65■■□□□ 1.226e-8■■■□□ 17.5
YBX3P16989 MRPL3-206ENST00000510043 640 ntTSL 25.68□□□□□ -1.56e-8■■■□□ 17.5
YBX3P16989 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.631e-10■■■□□ 17.5
YBX3P16989 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.021e-10■■■□□ 17.5
YBX3P16989 BPTF-205ENST00000424123 8295 ntAPPRIS ALT2 TSL 1 (best)5.32□□□□□ -1.561e-10■■■□□ 17.5
YBX3P16989 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.233e-7■■■□□ 17.5
YBX3P16989 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC34.19■■■■□ 3.062e-6■■■□□ 17.5
YBX3P16989 CMAS-203ENST00000535610 854 ntTSL 524.87■■□□□ 1.572e-6■■■□□ 17.5
YBX3P16989 CMAS-202ENST00000534981 1575 ntTSL 1 (best)24.58■■□□□ 1.522e-6■■■□□ 17.5
YBX3P16989 CMAS-205ENST00000538498 538 ntTSL 35.91□□□□□ -1.462e-6■■■□□ 17.5
YBX3P16989 COPG2-203ENST00000617523 2142 ntTSL 58.14□□□□□ -1.117e-7■■■□□ 17.5
YBX3P16989 MSMO1-205ENST00000507013 973 ntTSL 228.3■■■□□ 2.121e-7■■■□□ 17.5
YBX3P16989 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC7.53□□□□□ -1.21e-7■■■□□ 17.5
YBX3P16989 SLC25A24-203ENST00000565488 4271 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.272e-6■■■□□ 17.5
YBX3P16989 SLC25A24-201ENST00000264128 3320 ntTSL 511.3□□□□□ -0.62e-6■■■□□ 17.5
YBX3P16989 SLC25A24-202ENST00000370041 3404 ntTSL 1 (best) BASIC7.91□□□□□ -1.142e-6■■■□□ 17.5
YBX3P16989 CTSL-206ENST00000495822 988 ntTSL 1 (best)20.17■□□□□ 0.826e-11■■■□□ 17.5
YBX3P16989 CTSL-204ENST00000375894 975 ntTSL 319.17■□□□□ 0.666e-11■■■□□ 17.5
YBX3P16989 CTSL-202ENST00000342020 933 ntTSL 2 BASIC18.39■□□□□ 0.536e-11■■■□□ 17.5
YBX3P16989 CTSL-205ENST00000482054 908 ntTSL 218.39■□□□□ 0.536e-11■■■□□ 17.5
Retrieved 100 of 29,075 protein–RNA pairs in 461 ms