Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM56Q9BRZ2 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM56Q9BRZ2 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.14■□□□□ 0.97
TRIM56Q9BRZ2 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM56Q9BRZ2 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.14■□□□□ 0.97
TRIM56Q9BRZ2 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM56Q9BRZ2 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.14■□□□□ 0.97
TRIM56Q9BRZ2 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.14■□□□□ 0.97
TRIM56Q9BRZ2 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.14■□□□□ 0.97
TRIM56Q9BRZ2 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.14■□□□□ 0.97
TRIM56Q9BRZ2 MIR6084-201ENST00000622012 110 ntBASIC21.14■□□□□ 0.97
TRIM56Q9BRZ2 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.14■□□□□ 0.97
TRIM56Q9BRZ2 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM56Q9BRZ2 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.14■□□□□ 0.97
TRIM56Q9BRZ2 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM56Q9BRZ2 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.14■□□□□ 0.97
TRIM56Q9BRZ2 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM56Q9BRZ2 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM56Q9BRZ2 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM56Q9BRZ2 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM56Q9BRZ2 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM56Q9BRZ2 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM56Q9BRZ2 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM56Q9BRZ2 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM56Q9BRZ2 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.13■□□□□ 0.97
TRIM56Q9BRZ2 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM56Q9BRZ2 AC012414.1-201ENST00000556676 535 ntBASIC21.13■□□□□ 0.97
TRIM56Q9BRZ2 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.13■□□□□ 0.97
TRIM56Q9BRZ2 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM56Q9BRZ2 FEM1AP1-201ENST00000431297 1995 ntBASIC21.13■□□□□ 0.97
TRIM56Q9BRZ2 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM56Q9BRZ2 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM56Q9BRZ2 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
TRIM56Q9BRZ2 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM56Q9BRZ2 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM56Q9BRZ2 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM56Q9BRZ2 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.12■□□□□ 0.97
TRIM56Q9BRZ2 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM56Q9BRZ2 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
TRIM56Q9BRZ2 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM56Q9BRZ2 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM56Q9BRZ2 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.12■□□□□ 0.97
TRIM56Q9BRZ2 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.12■□□□□ 0.97
TRIM56Q9BRZ2 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.12■□□□□ 0.97
TRIM56Q9BRZ2 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.12■□□□□ 0.97
TRIM56Q9BRZ2 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC21.12■□□□□ 0.97
TRIM56Q9BRZ2 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM56Q9BRZ2 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM56Q9BRZ2 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
TRIM56Q9BRZ2 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.12■□□□□ 0.97
TRIM56Q9BRZ2 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.12■□□□□ 0.97
TRIM56Q9BRZ2 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM56Q9BRZ2 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM56Q9BRZ2 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM56Q9BRZ2 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.11■□□□□ 0.97
TRIM56Q9BRZ2 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM56Q9BRZ2 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM56Q9BRZ2 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM56Q9BRZ2 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM56Q9BRZ2 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.11■□□□□ 0.97
TRIM56Q9BRZ2 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.11■□□□□ 0.97
TRIM56Q9BRZ2 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.11■□□□□ 0.97
TRIM56Q9BRZ2 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM56Q9BRZ2 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.11■□□□□ 0.97
TRIM56Q9BRZ2 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
TRIM56Q9BRZ2 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
TRIM56Q9BRZ2 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM56Q9BRZ2 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM56Q9BRZ2 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM56Q9BRZ2 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM56Q9BRZ2 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM56Q9BRZ2 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM56Q9BRZ2 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.1■□□□□ 0.97
TRIM56Q9BRZ2 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.1■□□□□ 0.97
TRIM56Q9BRZ2 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.1■□□□□ 0.97
TRIM56Q9BRZ2 TPRG1LP1-201ENST00000598702 760 ntBASIC21.1■□□□□ 0.97
TRIM56Q9BRZ2 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM56Q9BRZ2 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM56Q9BRZ2 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
TRIM56Q9BRZ2 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM56Q9BRZ2 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM56Q9BRZ2 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
TRIM56Q9BRZ2 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
TRIM56Q9BRZ2 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.09■□□□□ 0.97
TRIM56Q9BRZ2 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
TRIM56Q9BRZ2 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM56Q9BRZ2 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM56Q9BRZ2 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM56Q9BRZ2 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM56Q9BRZ2 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM56Q9BRZ2 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.09■□□□□ 0.97
TRIM56Q9BRZ2 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.09■□□□□ 0.97
TRIM56Q9BRZ2 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.09■□□□□ 0.97
TRIM56Q9BRZ2 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM56Q9BRZ2 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM56Q9BRZ2 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM56Q9BRZ2 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
TRIM56Q9BRZ2 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.09■□□□□ 0.97
TRIM56Q9BRZ2 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM56Q9BRZ2 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms