Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CPNE4Q96A23 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CPNE4Q96A23 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.67■□□□□ 0.58
CPNE4Q96A23 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.67■□□□□ 0.58
CPNE4Q96A23 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.67■□□□□ 0.58
CPNE4Q96A23 CDCA4P2-201ENST00000441182 718 ntBASIC18.67■□□□□ 0.58
CPNE4Q96A23 AC026185.1-201ENST00000445748 174 ntBASIC18.67■□□□□ 0.58
CPNE4Q96A23 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CPNE4Q96A23 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CPNE4Q96A23 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CPNE4Q96A23 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CPNE4Q96A23 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.67■□□□□ 0.58
CPNE4Q96A23 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CPNE4Q96A23 SLC25A24-204ENST00000569674 2357 ntBASIC18.67■□□□□ 0.58
CPNE4Q96A23 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC18.67■□□□□ 0.58
CPNE4Q96A23 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CPNE4Q96A23 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CPNE4Q96A23 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CPNE4Q96A23 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.66■□□□□ 0.58
CPNE4Q96A23 AC007322.1-201ENST00000426983 750 ntBASIC18.66■□□□□ 0.58
CPNE4Q96A23 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CPNE4Q96A23 AC007322.4-201ENST00000509611 723 ntBASIC18.66■□□□□ 0.58
CPNE4Q96A23 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.66■□□□□ 0.58
CPNE4Q96A23 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.66■□□□□ 0.58
CPNE4Q96A23 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.66■□□□□ 0.58
CPNE4Q96A23 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.66■□□□□ 0.58
CPNE4Q96A23 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CPNE4Q96A23 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
CPNE4Q96A23 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.66■□□□□ 0.58
CPNE4Q96A23 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC18.66■□□□□ 0.58
CPNE4Q96A23 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.65■□□□□ 0.58
CPNE4Q96A23 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPNE4Q96A23 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPNE4Q96A23 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC18.65■□□□□ 0.58
CPNE4Q96A23 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CPNE4Q96A23 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPNE4Q96A23 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CPNE4Q96A23 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.65■□□□□ 0.58
CPNE4Q96A23 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.65■□□□□ 0.58
CPNE4Q96A23 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPNE4Q96A23 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPNE4Q96A23 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPNE4Q96A23 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.65■□□□□ 0.58
CPNE4Q96A23 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.65■□□□□ 0.58
CPNE4Q96A23 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.65■□□□□ 0.58
CPNE4Q96A23 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.65■□□□□ 0.58
CPNE4Q96A23 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.65■□□□□ 0.58
CPNE4Q96A23 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPNE4Q96A23 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CPNE4Q96A23 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPNE4Q96A23 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CPNE4Q96A23 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPNE4Q96A23 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CPNE4Q96A23 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CPNE4Q96A23 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
CPNE4Q96A23 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CPNE4Q96A23 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.64■□□□□ 0.57
CPNE4Q96A23 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CPNE4Q96A23 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CPNE4Q96A23 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.64■□□□□ 0.57
CPNE4Q96A23 AC090192.1-201ENST00000517740 490 ntBASIC18.64■□□□□ 0.57
CPNE4Q96A23 CD44-222ENST00000526025 1052 ntTSL 2 BASIC18.64■□□□□ 0.57
CPNE4Q96A23 RAP2CP1-201ENST00000605103 478 ntBASIC18.64■□□□□ 0.57
CPNE4Q96A23 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CPNE4Q96A23 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
CPNE4Q96A23 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CPNE4Q96A23 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CPNE4Q96A23 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC18.63■□□□□ 0.57
CPNE4Q96A23 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CPNE4Q96A23 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CPNE4Q96A23 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CPNE4Q96A23 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CPNE4Q96A23 CNN2P6-201ENST00000439038 900 ntBASIC18.63■□□□□ 0.57
CPNE4Q96A23 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
CPNE4Q96A23 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CPNE4Q96A23 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CPNE4Q96A23 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CPNE4Q96A23 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC18.63■□□□□ 0.57
CPNE4Q96A23 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CPNE4Q96A23 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CPNE4Q96A23 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CPNE4Q96A23 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.63■□□□□ 0.57
CPNE4Q96A23 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CPNE4Q96A23 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.63■□□□□ 0.57
CPNE4Q96A23 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC18.62■□□□□ 0.57
CPNE4Q96A23 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CPNE4Q96A23 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CPNE4Q96A23 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CPNE4Q96A23 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC18.62■□□□□ 0.57
CPNE4Q96A23 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CPNE4Q96A23 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
CPNE4Q96A23 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CPNE4Q96A23 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC18.62■□□□□ 0.57
CPNE4Q96A23 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CPNE4Q96A23 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CPNE4Q96A23 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CPNE4Q96A23 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CPNE4Q96A23 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CPNE4Q96A23 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CPNE4Q96A23 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms