Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
VPS13CQ709C8 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13CQ709C8 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13CQ709C8 KRT17P3-201ENST00000420566 1262 ntBASIC17.47■□□□□ 0.39
VPS13CQ709C8 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13CQ709C8 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13CQ709C8 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13CQ709C8 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13CQ709C8 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13CQ709C8 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13CQ709C8 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC17.47■□□□□ 0.39
VPS13CQ709C8 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VPS13CQ709C8 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13CQ709C8 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13CQ709C8 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13CQ709C8 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
VPS13CQ709C8 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13CQ709C8 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13CQ709C8 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS13CQ709C8 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS13CQ709C8 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS13CQ709C8 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC17.46■□□□□ 0.39
VPS13CQ709C8 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS13CQ709C8 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS13CQ709C8 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS13CQ709C8 POM121L13P-201ENST00000422362 380 ntBASIC17.46■□□□□ 0.39
VPS13CQ709C8 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS13CQ709C8 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.46■□□□□ 0.39
VPS13CQ709C8 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.46■□□□□ 0.39
VPS13CQ709C8 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS13CQ709C8 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
VPS13CQ709C8 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
VPS13CQ709C8 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS13CQ709C8 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC17.46■□□□□ 0.39
VPS13CQ709C8 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
VPS13CQ709C8 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13CQ709C8 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS13CQ709C8 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13CQ709C8 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13CQ709C8 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.45■□□□□ 0.38
VPS13CQ709C8 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS13CQ709C8 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC17.45■□□□□ 0.38
VPS13CQ709C8 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13CQ709C8 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS13CQ709C8 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13CQ709C8 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
VPS13CQ709C8 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS13CQ709C8 AC079089.2-201ENST00000531211 1277 ntBASIC17.45■□□□□ 0.38
VPS13CQ709C8 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13CQ709C8 AL049637.2-201ENST00000641778 930 ntBASIC17.45■□□□□ 0.38
VPS13CQ709C8 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
VPS13CQ709C8 ME2-208ENST00000638937 2471 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS13CQ709C8 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13CQ709C8 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS13CQ709C8 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
VPS13CQ709C8 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
VPS13CQ709C8 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS13CQ709C8 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
VPS13CQ709C8 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
VPS13CQ709C8 AC133561.5-201ENST00000635547 218 ntBASIC17.44■□□□□ 0.38
VPS13CQ709C8 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC17.44■□□□□ 0.38
VPS13CQ709C8 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13CQ709C8 KRT18P35-201ENST00000510488 1269 ntBASIC17.44■□□□□ 0.38
VPS13CQ709C8 MIR4785-201ENST00000585005 73 ntBASIC17.44■□□□□ 0.38
VPS13CQ709C8 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC17.44■□□□□ 0.38
VPS13CQ709C8 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13CQ709C8 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13CQ709C8 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
VPS13CQ709C8 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC17.44■□□□□ 0.38
VPS13CQ709C8 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
VPS13CQ709C8 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC17.44■□□□□ 0.38
VPS13CQ709C8 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.44■□□□□ 0.38
VPS13CQ709C8 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS13CQ709C8 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
VPS13CQ709C8 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
VPS13CQ709C8 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC17.43■□□□□ 0.38
VPS13CQ709C8 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS13CQ709C8 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS13CQ709C8 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS13CQ709C8 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
VPS13CQ709C8 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
VPS13CQ709C8 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS13CQ709C8 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC17.43■□□□□ 0.38
VPS13CQ709C8 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS13CQ709C8 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS13CQ709C8 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
VPS13CQ709C8 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
VPS13CQ709C8 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC17.43■□□□□ 0.38
VPS13CQ709C8 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC17.43■□□□□ 0.38
VPS13CQ709C8 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
VPS13CQ709C8 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS13CQ709C8 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
VPS13CQ709C8 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS13CQ709C8 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS13CQ709C8 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS13CQ709C8 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.42■□□□□ 0.38
VPS13CQ709C8 MTDHP1-201ENST00000605323 784 ntBASIC17.42■□□□□ 0.38
VPS13CQ709C8 AL353708.3-201ENST00000610272 989 ntBASIC17.42■□□□□ 0.38
VPS13CQ709C8 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS13CQ709C8 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms