Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL25A1Q9BXS0 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.53■■□□□ 1.04
COL25A1Q9BXS0 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
COL25A1Q9BXS0 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL25A1Q9BXS0 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL25A1Q9BXS0 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL25A1Q9BXS0 MCRIP2P1-201ENST00000394346 511 ntBASIC21.52■■□□□ 1.04
COL25A1Q9BXS0 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.52■■□□□ 1.04
COL25A1Q9BXS0 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL25A1Q9BXS0 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC21.52■■□□□ 1.04
COL25A1Q9BXS0 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
COL25A1Q9BXS0 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
COL25A1Q9BXS0 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
COL25A1Q9BXS0 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.51■■□□□ 1.03
COL25A1Q9BXS0 AP004607.7-201ENST00000527152 1677 ntBASIC21.51■■□□□ 1.03
COL25A1Q9BXS0 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL25A1Q9BXS0 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.51■■□□□ 1.03
COL25A1Q9BXS0 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
COL25A1Q9BXS0 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC21.51■■□□□ 1.03
COL25A1Q9BXS0 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC21.51■■□□□ 1.03
COL25A1Q9BXS0 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
COL25A1Q9BXS0 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL25A1Q9BXS0 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL25A1Q9BXS0 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.5■■□□□ 1.03
COL25A1Q9BXS0 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.5■■□□□ 1.03
COL25A1Q9BXS0 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL25A1Q9BXS0 KRT18P68-201ENST00000392293 1000 ntBASIC21.5■■□□□ 1.03
COL25A1Q9BXS0 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.5■■□□□ 1.03
COL25A1Q9BXS0 CLN6-221ENST00000637494 765 ntTSL 5 BASIC21.5■■□□□ 1.03
COL25A1Q9BXS0 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL25A1Q9BXS0 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL25A1Q9BXS0 HTR7P1-201ENST00000538670 1336 ntBASIC21.5■■□□□ 1.03
COL25A1Q9BXS0 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.5■■□□□ 1.03
COL25A1Q9BXS0 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL25A1Q9BXS0 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL25A1Q9BXS0 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
COL25A1Q9BXS0 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL25A1Q9BXS0 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL25A1Q9BXS0 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL25A1Q9BXS0 NUDT16P1-203ENST00000513809 620 ntBASIC21.49■■□□□ 1.03
COL25A1Q9BXS0 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC21.49■■□□□ 1.03
COL25A1Q9BXS0 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC21.49■■□□□ 1.03
COL25A1Q9BXS0 FITM1-202ENST00000559294 800 ntBASIC21.49■■□□□ 1.03
COL25A1Q9BXS0 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.49■■□□□ 1.03
COL25A1Q9BXS0 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL25A1Q9BXS0 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.49■■□□□ 1.03
COL25A1Q9BXS0 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL25A1Q9BXS0 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL25A1Q9BXS0 DUSP8P3-201ENST00000399571 1760 ntBASIC21.48■■□□□ 1.03
COL25A1Q9BXS0 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.48■■□□□ 1.03
COL25A1Q9BXS0 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
COL25A1Q9BXS0 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL25A1Q9BXS0 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL25A1Q9BXS0 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
COL25A1Q9BXS0 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL25A1Q9BXS0 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL25A1Q9BXS0 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.48■■□□□ 1.03
COL25A1Q9BXS0 SAPCD2P2-201ENST00000431719 1174 ntBASIC21.48■■□□□ 1.03
COL25A1Q9BXS0 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL25A1Q9BXS0 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC21.48■■□□□ 1.03
COL25A1Q9BXS0 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.48■■□□□ 1.03
COL25A1Q9BXS0 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL25A1Q9BXS0 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL25A1Q9BXS0 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL25A1Q9BXS0 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL25A1Q9BXS0 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL25A1Q9BXS0 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL25A1Q9BXS0 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
COL25A1Q9BXS0 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL25A1Q9BXS0 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC21.47■■□□□ 1.03
COL25A1Q9BXS0 PCED1CP-201ENST00000419887 785 ntBASIC21.47■■□□□ 1.03
COL25A1Q9BXS0 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL25A1Q9BXS0 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
COL25A1Q9BXS0 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
COL25A1Q9BXS0 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 AC128688.1-201ENST00000487626 519 ntBASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL25A1Q9BXS0 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL25A1Q9BXS0 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC21.45■■□□□ 1.02
COL25A1Q9BXS0 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.45■■□□□ 1.02
COL25A1Q9BXS0 AC012313.10-201ENST00000623509 926 ntBASIC21.45■■□□□ 1.02
COL25A1Q9BXS0 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms