Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 BX276092.2-201ENST00000417668 665 ntBASIC27.26■■□□□ 1.95
RTF1Q92541 CASP6-205ENST00000505486 538 ntTSL 4 BASIC27.26■■□□□ 1.95
RTF1Q92541 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
RTF1Q92541 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC27.26■■□□□ 1.95
RTF1Q92541 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC27.26■■□□□ 1.95
RTF1Q92541 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC27.26■■□□□ 1.95
RTF1Q92541 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.95
RTF1Q92541 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC27.26■■□□□ 1.95
RTF1Q92541 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC27.26■■□□□ 1.95
RTF1Q92541 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
RTF1Q92541 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
RTF1Q92541 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC27.25■■□□□ 1.95
RTF1Q92541 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC27.25■■□□□ 1.95
RTF1Q92541 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
RTF1Q92541 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC27.25■■□□□ 1.95
RTF1Q92541 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
RTF1Q92541 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC27.25■■□□□ 1.95
RTF1Q92541 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC27.25■■□□□ 1.95
RTF1Q92541 FAM21FP-204ENST00000608637 956 ntBASIC27.25■■□□□ 1.95
RTF1Q92541 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
RTF1Q92541 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
RTF1Q92541 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
RTF1Q92541 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
RTF1Q92541 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
RTF1Q92541 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC27.24■■□□□ 1.95
RTF1Q92541 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC27.24■■□□□ 1.95
RTF1Q92541 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC27.24■■□□□ 1.95
RTF1Q92541 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
RTF1Q92541 ISCU-212ENST00000547005 795 ntTSL 3 BASIC27.24■■□□□ 1.95
RTF1Q92541 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
RTF1Q92541 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC27.24■■□□□ 1.95
RTF1Q92541 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC27.24■■□□□ 1.95
RTF1Q92541 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
RTF1Q92541 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC27.24■■□□□ 1.95
RTF1Q92541 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
RTF1Q92541 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC27.23■■□□□ 1.95
RTF1Q92541 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
RTF1Q92541 PPP1R14BP2-201ENST00000426284 444 ntBASIC27.23■■□□□ 1.95
RTF1Q92541 CD99P1-205ENST00000527459 561 ntBASIC27.23■■□□□ 1.95
RTF1Q92541 KRT18P6-201ENST00000555540 1265 ntBASIC27.23■■□□□ 1.95
RTF1Q92541 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
RTF1Q92541 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
RTF1Q92541 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
RTF1Q92541 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
RTF1Q92541 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
RTF1Q92541 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
RTF1Q92541 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
RTF1Q92541 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC27.22■■□□□ 1.95
RTF1Q92541 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC27.22■■□□□ 1.95
RTF1Q92541 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC27.22■■□□□ 1.95
RTF1Q92541 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
RTF1Q92541 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
RTF1Q92541 AC092118.2-201ENST00000613495 667 ntBASIC27.22■■□□□ 1.95
RTF1Q92541 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC27.22■■□□□ 1.95
RTF1Q92541 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC27.22■■□□□ 1.95
RTF1Q92541 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC27.22■■□□□ 1.95
RTF1Q92541 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC27.22■■□□□ 1.95
RTF1Q92541 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
RTF1Q92541 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
RTF1Q92541 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC27.21■■□□□ 1.95
RTF1Q92541 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC27.21■■□□□ 1.95
RTF1Q92541 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
RTF1Q92541 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
RTF1Q92541 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
RTF1Q92541 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
RTF1Q92541 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC27.21■■□□□ 1.95
RTF1Q92541 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
RTF1Q92541 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
RTF1Q92541 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
RTF1Q92541 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
RTF1Q92541 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC27.2■■□□□ 1.95
RTF1Q92541 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
RTF1Q92541 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
RTF1Q92541 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
RTF1Q92541 MYB-221ENST00000527615 2381 ntTSL 5 BASIC27.2■■□□□ 1.95
RTF1Q92541 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
RTF1Q92541 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
RTF1Q92541 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC27.2■■□□□ 1.94
RTF1Q92541 PTPA-214ENST00000423100 988 ntTSL 2 BASIC27.2■■□□□ 1.94
RTF1Q92541 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC27.2■■□□□ 1.94
RTF1Q92541 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
RTF1Q92541 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC27.2■■□□□ 1.94
RTF1Q92541 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC27.2■■□□□ 1.94
RTF1Q92541 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
RTF1Q92541 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
RTF1Q92541 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
RTF1Q92541 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
RTF1Q92541 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
RTF1Q92541 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
RTF1Q92541 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC27.19■■□□□ 1.94
RTF1Q92541 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC27.19■■□□□ 1.94
RTF1Q92541 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC27.19■■□□□ 1.94
RTF1Q92541 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC27.19■■□□□ 1.94
RTF1Q92541 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
RTF1Q92541 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
RTF1Q92541 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
RTF1Q92541 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
RTF1Q92541 EP400NL-214ENST00000641289 2402 ntBASIC27.18■■□□□ 1.94
RTF1Q92541 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
RTF1Q92541 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC27.18■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms