Protein–RNA interactions for Protein: Q8N3V7

SYNPO, Synaptopodin, humanhuman

Predictions only

Length 929 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPOQ8N3V7 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SYNPOQ8N3V7 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SYNPOQ8N3V7 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SYNPOQ8N3V7 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SYNPOQ8N3V7 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC21.25■□□□□ 0.99
SYNPOQ8N3V7 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.25■□□□□ 0.99
SYNPOQ8N3V7 CYP2T3P-201ENST00000601990 817 ntBASIC21.25■□□□□ 0.99
SYNPOQ8N3V7 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
SYNPOQ8N3V7 AC139530.1-201ENST00000575312 1977 ntBASIC21.25■□□□□ 0.99
SYNPOQ8N3V7 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SYNPOQ8N3V7 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SYNPOQ8N3V7 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SYNPOQ8N3V7 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SYNPOQ8N3V7 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SYNPOQ8N3V7 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.24■□□□□ 0.99
SYNPOQ8N3V7 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SYNPOQ8N3V7 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC21.24■□□□□ 0.99
SYNPOQ8N3V7 AC091799.1-201ENST00000422823 811 ntBASIC21.24■□□□□ 0.99
SYNPOQ8N3V7 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.24■□□□□ 0.99
SYNPOQ8N3V7 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SYNPOQ8N3V7 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SYNPOQ8N3V7 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.24■□□□□ 0.99
SYNPOQ8N3V7 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SYNPOQ8N3V7 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SYNPOQ8N3V7 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
SYNPOQ8N3V7 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SYNPOQ8N3V7 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SYNPOQ8N3V7 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SYNPOQ8N3V7 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SYNPOQ8N3V7 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SYNPOQ8N3V7 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
SYNPOQ8N3V7 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
SYNPOQ8N3V7 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
SYNPOQ8N3V7 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SYNPOQ8N3V7 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SYNPOQ8N3V7 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC21.23■□□□□ 0.99
SYNPOQ8N3V7 AC008550.1-201ENST00000511500 884 ntBASIC21.23■□□□□ 0.99
SYNPOQ8N3V7 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.23■□□□□ 0.99
SYNPOQ8N3V7 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.23■□□□□ 0.99
SYNPOQ8N3V7 AL589743.5-201ENST00000616611 1050 ntBASIC21.23■□□□□ 0.99
SYNPOQ8N3V7 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SYNPOQ8N3V7 KRT17P1-201ENST00000399211 1546 ntBASIC21.23■□□□□ 0.99
SYNPOQ8N3V7 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
SYNPOQ8N3V7 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SYNPOQ8N3V7 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SYNPOQ8N3V7 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SYNPOQ8N3V7 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SYNPOQ8N3V7 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.22■□□□□ 0.99
SYNPOQ8N3V7 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
SYNPOQ8N3V7 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
SYNPOQ8N3V7 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
SYNPOQ8N3V7 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
SYNPOQ8N3V7 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SYNPOQ8N3V7 AC245052.3-201ENST00000450182 901 ntBASIC21.22■□□□□ 0.99
SYNPOQ8N3V7 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC21.22■□□□□ 0.99
SYNPOQ8N3V7 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21.22■□□□□ 0.99
SYNPOQ8N3V7 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC21.22■□□□□ 0.99
SYNPOQ8N3V7 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SYNPOQ8N3V7 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SYNPOQ8N3V7 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SYNPOQ8N3V7 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SYNPOQ8N3V7 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SYNPOQ8N3V7 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.21■□□□□ 0.99
SYNPOQ8N3V7 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
SYNPOQ8N3V7 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SYNPOQ8N3V7 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SYNPOQ8N3V7 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SYNPOQ8N3V7 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SYNPOQ8N3V7 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.21■□□□□ 0.99
SYNPOQ8N3V7 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC21.21■□□□□ 0.99
SYNPOQ8N3V7 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.21■□□□□ 0.99
SYNPOQ8N3V7 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
SYNPOQ8N3V7 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.21■□□□□ 0.99
SYNPOQ8N3V7 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.21■□□□□ 0.99
SYNPOQ8N3V7 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SYNPOQ8N3V7 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.21■□□□□ 0.99
SYNPOQ8N3V7 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
SYNPOQ8N3V7 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
SYNPOQ8N3V7 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 MIR718-201ENST00000390190 70 ntBASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 AC008403.3-201ENST00000598924 454 ntBASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 AL359736.2-201ENST00000621992 437 ntBASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 MME-217ENST00000616757 1315 ntTSL 5 BASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 AC003102.1-202ENST00000563394 1796 ntBASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.2■□□□□ 0.98
SYNPOQ8N3V7 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms