Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC23.83■■□□□ 1.41
ATL3Q6DD88 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
ATL3Q6DD88 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
ATL3Q6DD88 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC23.83■■□□□ 1.4
ATL3Q6DD88 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
ATL3Q6DD88 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
ATL3Q6DD88 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
ATL3Q6DD88 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC23.82■■□□□ 1.4
ATL3Q6DD88 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC23.82■■□□□ 1.4
ATL3Q6DD88 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC23.82■■□□□ 1.4
ATL3Q6DD88 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC23.82■■□□□ 1.4
ATL3Q6DD88 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC23.82■■□□□ 1.4
ATL3Q6DD88 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC23.82■■□□□ 1.4
ATL3Q6DD88 AC110285.6-201ENST00000617652 491 ntBASIC23.82■■□□□ 1.4
ATL3Q6DD88 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
ATL3Q6DD88 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC23.82■■□□□ 1.4
ATL3Q6DD88 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC23.82■■□□□ 1.4
ATL3Q6DD88 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
ATL3Q6DD88 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
ATL3Q6DD88 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC23.81■■□□□ 1.4
ATL3Q6DD88 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
ATL3Q6DD88 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
ATL3Q6DD88 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC23.81■■□□□ 1.4
ATL3Q6DD88 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
ATL3Q6DD88 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC23.81■■□□□ 1.4
ATL3Q6DD88 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC23.81■■□□□ 1.4
ATL3Q6DD88 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC23.81■■□□□ 1.4
ATL3Q6DD88 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
ATL3Q6DD88 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC23.81■■□□□ 1.4
ATL3Q6DD88 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC23.81■■□□□ 1.4
ATL3Q6DD88 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
ATL3Q6DD88 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC23.8■■□□□ 1.4
ATL3Q6DD88 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
ATL3Q6DD88 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
ATL3Q6DD88 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ATL3Q6DD88 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
ATL3Q6DD88 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ATL3Q6DD88 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC23.8■■□□□ 1.4
ATL3Q6DD88 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC23.8■■□□□ 1.4
ATL3Q6DD88 AC092667.1-201ENST00000434301 2586 ntBASIC23.8■■□□□ 1.4
ATL3Q6DD88 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ATL3Q6DD88 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
ATL3Q6DD88 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC23.79■■□□□ 1.4
ATL3Q6DD88 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC23.79■■□□□ 1.4
ATL3Q6DD88 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC23.79■■□□□ 1.4
ATL3Q6DD88 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC23.79■■□□□ 1.4
ATL3Q6DD88 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC23.79■■□□□ 1.4
ATL3Q6DD88 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
ATL3Q6DD88 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC23.79■■□□□ 1.4
ATL3Q6DD88 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC23.79■■□□□ 1.4
ATL3Q6DD88 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
ATL3Q6DD88 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC23.79■■□□□ 1.4
ATL3Q6DD88 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
ATL3Q6DD88 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC23.79■■□□□ 1.4
ATL3Q6DD88 BID-203ENST00000399765 1879 ntTSL 2 BASIC23.79■■□□□ 1.4
ATL3Q6DD88 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
ATL3Q6DD88 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
ATL3Q6DD88 AC020907.5-201ENST00000624372 1936 ntBASIC23.78■■□□□ 1.4
ATL3Q6DD88 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
ATL3Q6DD88 AC061975.6-201ENST00000579045 1553 ntBASIC23.78■■□□□ 1.4
ATL3Q6DD88 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
ATL3Q6DD88 AC027702.1-201ENST00000563810 1770 ntBASIC23.78■■□□□ 1.4
ATL3Q6DD88 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
ATL3Q6DD88 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC23.78■■□□□ 1.4
ATL3Q6DD88 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
ATL3Q6DD88 POU5F1P4-201ENST00000413175 1085 ntBASIC23.78■■□□□ 1.4
ATL3Q6DD88 SUDS3P1-201ENST00000505831 966 ntBASIC23.78■■□□□ 1.4
ATL3Q6DD88 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
ATL3Q6DD88 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
ATL3Q6DD88 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
ATL3Q6DD88 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
ATL3Q6DD88 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC23.78■■□□□ 1.4
ATL3Q6DD88 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
ATL3Q6DD88 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
ATL3Q6DD88 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
ATL3Q6DD88 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
ATL3Q6DD88 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC23.77■■□□□ 1.4
ATL3Q6DD88 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC23.77■■□□□ 1.4
ATL3Q6DD88 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
ATL3Q6DD88 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
ATL3Q6DD88 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
ATL3Q6DD88 AL358852.1-201ENST00000623174 1268 ntBASIC23.77■■□□□ 1.4
ATL3Q6DD88 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
ATL3Q6DD88 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
ATL3Q6DD88 ADM-207ENST00000530439 1839 ntTSL 2 BASIC23.77■■□□□ 1.4
ATL3Q6DD88 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
ATL3Q6DD88 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
ATL3Q6DD88 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
ATL3Q6DD88 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
ATL3Q6DD88 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
ATL3Q6DD88 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
ATL3Q6DD88 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
ATL3Q6DD88 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC23.76■■□□□ 1.39
ATL3Q6DD88 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
ATL3Q6DD88 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
ATL3Q6DD88 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC23.76■■□□□ 1.39
ATL3Q6DD88 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
ATL3Q6DD88 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
ATL3Q6DD88 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC23.75■■□□□ 1.39
ATL3Q6DD88 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms