Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A2P12110 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A2P12110 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A2P12110 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
COL6A2P12110 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A2P12110 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A2P12110 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A2P12110 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A2P12110 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A2P12110 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.59■□□□□ 0.89
COL6A2P12110 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.59■□□□□ 0.89
COL6A2P12110 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.59■□□□□ 0.89
COL6A2P12110 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A2P12110 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A2P12110 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A2P12110 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.59■□□□□ 0.89
COL6A2P12110 AC053503.5-201ENST00000601508 636 ntBASIC20.59■□□□□ 0.89
COL6A2P12110 AC106739.1-201ENST00000617035 715 ntBASIC20.59■□□□□ 0.89
COL6A2P12110 AC073314.1-201ENST00000568729 2216 ntBASIC20.59■□□□□ 0.89
COL6A2P12110 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A2P12110 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A2P12110 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.59■□□□□ 0.89
COL6A2P12110 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A2P12110 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.89
COL6A2P12110 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.89
COL6A2P12110 AC007225.1-201ENST00000566331 1836 ntBASIC20.58■□□□□ 0.89
COL6A2P12110 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL6A2P12110 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL6A2P12110 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
COL6A2P12110 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL6A2P12110 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
COL6A2P12110 PBX2P1-201ENST00000493219 1291 ntBASIC20.58■□□□□ 0.89
COL6A2P12110 EEF1DP3-203ENST00000566025 782 ntBASIC20.58■□□□□ 0.89
COL6A2P12110 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.58■□□□□ 0.89
COL6A2P12110 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL6A2P12110 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.58■□□□□ 0.88
COL6A2P12110 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL6A2P12110 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL6A2P12110 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
COL6A2P12110 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
COL6A2P12110 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
COL6A2P12110 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A2P12110 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A2P12110 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A2P12110 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
COL6A2P12110 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A2P12110 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A2P12110 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A2P12110 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.57■□□□□ 0.88
COL6A2P12110 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.57■□□□□ 0.88
COL6A2P12110 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.57■□□□□ 0.88
COL6A2P12110 AC131212.1-201ENST00000613771 668 ntBASIC20.57■□□□□ 0.88
COL6A2P12110 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A2P12110 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A2P12110 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A2P12110 RASA4CP-201ENST00000424092 1398 ntBASIC20.57■□□□□ 0.88
COL6A2P12110 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.57■□□□□ 0.88
COL6A2P12110 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
COL6A2P12110 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A2P12110 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A2P12110 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.56■□□□□ 0.88
COL6A2P12110 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.56■□□□□ 0.88
COL6A2P12110 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.56■□□□□ 0.88
COL6A2P12110 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A2P12110 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.56■□□□□ 0.88
COL6A2P12110 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.56■□□□□ 0.88
COL6A2P12110 AC096631.2-201ENST00000436136 790 ntBASIC20.56■□□□□ 0.88
COL6A2P12110 AP001330.3-201ENST00000520123 633 ntBASIC20.56■□□□□ 0.88
COL6A2P12110 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.56■□□□□ 0.88
COL6A2P12110 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.56■□□□□ 0.88
COL6A2P12110 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
COL6A2P12110 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.56■□□□□ 0.88
COL6A2P12110 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A2P12110 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
COL6A2P12110 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A2P12110 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A2P12110 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
COL6A2P12110 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
COL6A2P12110 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A2P12110 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.55■□□□□ 0.88
COL6A2P12110 AL355001.2-201ENST00000620617 1191 ntBASIC20.55■□□□□ 0.88
COL6A2P12110 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A2P12110 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
COL6A2P12110 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
COL6A2P12110 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A2P12110 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A2P12110 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
COL6A2P12110 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A2P12110 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.55■□□□□ 0.88
COL6A2P12110 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A2P12110 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.54■□□□□ 0.88
COL6A2P12110 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.54■□□□□ 0.88
COL6A2P12110 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
COL6A2P12110 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A2P12110 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A2P12110 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A2P12110 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.54■□□□□ 0.88
COL6A2P12110 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A2P12110 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.54■□□□□ 0.88
COL6A2P12110 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms