Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PCNAP12004 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.24■□□□□ 0.83
PCNAP12004 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.24■□□□□ 0.83
PCNAP12004 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCNAP12004 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
PCNAP12004 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCNAP12004 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
PCNAP12004 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.24■□□□□ 0.83
PCNAP12004 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
PCNAP12004 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCNAP12004 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCNAP12004 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PCNAP12004 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCNAP12004 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCNAP12004 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCNAP12004 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCNAP12004 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.23■□□□□ 0.83
PCNAP12004 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.23■□□□□ 0.83
PCNAP12004 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCNAP12004 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
PCNAP12004 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.23■□□□□ 0.83
PCNAP12004 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.23■□□□□ 0.83
PCNAP12004 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.23■□□□□ 0.83
PCNAP12004 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCNAP12004 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCNAP12004 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCNAP12004 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCNAP12004 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCNAP12004 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
PCNAP12004 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCNAP12004 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCNAP12004 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCNAP12004 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.22■□□□□ 0.83
PCNAP12004 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCNAP12004 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.22■□□□□ 0.83
PCNAP12004 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.22■□□□□ 0.83
PCNAP12004 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCNAP12004 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PCNAP12004 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.22■□□□□ 0.83
PCNAP12004 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.22■□□□□ 0.83
PCNAP12004 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
PCNAP12004 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PCNAP12004 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PCNAP12004 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCNAP12004 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCNAP12004 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCNAP12004 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCNAP12004 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PCNAP12004 LINC02228-203ENST00000641970 1355 ntBASIC20.21■□□□□ 0.83
PCNAP12004 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCNAP12004 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PCNAP12004 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCNAP12004 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.21■□□□□ 0.83
PCNAP12004 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PCNAP12004 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PCNAP12004 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCNAP12004 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.21■□□□□ 0.83
PCNAP12004 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCNAP12004 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.21■□□□□ 0.83
PCNAP12004 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.21■□□□□ 0.83
PCNAP12004 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
PCNAP12004 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCNAP12004 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCNAP12004 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCNAP12004 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCNAP12004 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCNAP12004 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
PCNAP12004 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCNAP12004 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
PCNAP12004 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.21■□□□□ 0.83
PCNAP12004 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
PCNAP12004 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
PCNAP12004 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
PCNAP12004 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
PCNAP12004 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCNAP12004 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCNAP12004 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PCNAP12004 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PCNAP12004 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PCNAP12004 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PCNAP12004 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.2■□□□□ 0.82
PCNAP12004 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCNAP12004 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCNAP12004 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.2■□□□□ 0.82
PCNAP12004 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PCNAP12004 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCNAP12004 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCNAP12004 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PCNAP12004 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCNAP12004 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCNAP12004 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PCNAP12004 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCNAP12004 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
PCNAP12004 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.19■□□□□ 0.82
PCNAP12004 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
PCNAP12004 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.19■□□□□ 0.82
PCNAP12004 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
PCNAP12004 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCNAP12004 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCNAP12004 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms