Protein–RNA interactions for Protein: Q96DD0

LRRC39, Leucine-rich repeat-containing protein 39, humanhuman

Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC39Q96DD0 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC39Q96DD0 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC39Q96DD0 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.11■□□□□ 0.97
LRRC39Q96DD0 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC39Q96DD0 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.11■□□□□ 0.97
LRRC39Q96DD0 AC106739.1-201ENST00000617035 715 ntBASIC21.11■□□□□ 0.97
LRRC39Q96DD0 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.11■□□□□ 0.97
LRRC39Q96DD0 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC39Q96DD0 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.11■□□□□ 0.97
LRRC39Q96DD0 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC39Q96DD0 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC39Q96DD0 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.11■□□□□ 0.97
LRRC39Q96DD0 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.1■□□□□ 0.97
LRRC39Q96DD0 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
LRRC39Q96DD0 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.1■□□□□ 0.97
LRRC39Q96DD0 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LRRC39Q96DD0 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LRRC39Q96DD0 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LRRC39Q96DD0 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LRRC39Q96DD0 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.1■□□□□ 0.97
LRRC39Q96DD0 AC131212.1-201ENST00000613771 668 ntBASIC21.1■□□□□ 0.97
LRRC39Q96DD0 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LRRC39Q96DD0 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
LRRC39Q96DD0 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
LRRC39Q96DD0 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
LRRC39Q96DD0 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.1■□□□□ 0.97
LRRC39Q96DD0 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
LRRC39Q96DD0 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.1■□□□□ 0.97
LRRC39Q96DD0 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRRC39Q96DD0 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LRRC39Q96DD0 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LRRC39Q96DD0 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRRC39Q96DD0 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.09■□□□□ 0.97
LRRC39Q96DD0 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRRC39Q96DD0 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRRC39Q96DD0 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRRC39Q96DD0 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LRRC39Q96DD0 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LRRC39Q96DD0 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
LRRC39Q96DD0 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.09■□□□□ 0.97
LRRC39Q96DD0 PBX2P1-201ENST00000493219 1291 ntBASIC21.09■□□□□ 0.97
LRRC39Q96DD0 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.09■□□□□ 0.97
LRRC39Q96DD0 AP001330.3-201ENST00000520123 633 ntBASIC21.09■□□□□ 0.97
LRRC39Q96DD0 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.09■□□□□ 0.97
LRRC39Q96DD0 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRRC39Q96DD0 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRRC39Q96DD0 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.09■□□□□ 0.97
LRRC39Q96DD0 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
LRRC39Q96DD0 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRRC39Q96DD0 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
LRRC39Q96DD0 RASA4CP-201ENST00000424092 1398 ntBASIC21.09■□□□□ 0.97
LRRC39Q96DD0 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.08■□□□□ 0.97
LRRC39Q96DD0 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.08■□□□□ 0.97
LRRC39Q96DD0 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LRRC39Q96DD0 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.08■□□□□ 0.97
LRRC39Q96DD0 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
LRRC39Q96DD0 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LRRC39Q96DD0 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
LRRC39Q96DD0 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LRRC39Q96DD0 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LRRC39Q96DD0 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LRRC39Q96DD0 EEF1DP3-203ENST00000566025 782 ntBASIC21.08■□□□□ 0.97
LRRC39Q96DD0 AC053503.5-201ENST00000601508 636 ntBASIC21.08■□□□□ 0.97
LRRC39Q96DD0 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
LRRC39Q96DD0 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
LRRC39Q96DD0 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
LRRC39Q96DD0 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
LRRC39Q96DD0 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
LRRC39Q96DD0 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.08■□□□□ 0.96
LRRC39Q96DD0 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.07■□□□□ 0.96
LRRC39Q96DD0 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
LRRC39Q96DD0 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRC39Q96DD0 AC096631.2-201ENST00000436136 790 ntBASIC21.07■□□□□ 0.96
LRRC39Q96DD0 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.07■□□□□ 0.96
LRRC39Q96DD0 AL355001.2-201ENST00000620617 1191 ntBASIC21.07■□□□□ 0.96
LRRC39Q96DD0 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRC39Q96DD0 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LRRC39Q96DD0 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRC39Q96DD0 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LRRC39Q96DD0 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRC39Q96DD0 AC008406.3-201ENST00000620001 1374 ntBASIC21.07■□□□□ 0.96
LRRC39Q96DD0 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRC39Q96DD0 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.07■□□□□ 0.96
LRRC39Q96DD0 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRC39Q96DD0 AC073314.1-201ENST00000568729 2216 ntBASIC21.06■□□□□ 0.96
LRRC39Q96DD0 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.06■□□□□ 0.96
LRRC39Q96DD0 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.06■□□□□ 0.96
LRRC39Q96DD0 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LRRC39Q96DD0 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
LRRC39Q96DD0 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
LRRC39Q96DD0 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LRRC39Q96DD0 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LRRC39Q96DD0 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LRRC39Q96DD0 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.06■□□□□ 0.96
LRRC39Q96DD0 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.06■□□□□ 0.96
LRRC39Q96DD0 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LRRC39Q96DD0 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
LRRC39Q96DD0 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LRRC39Q96DD0 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.06■□□□□ 0.96
LRRC39Q96DD0 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms