Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC11.64□□□□□ -0.55
UBR4Q5T4S7 TSPY21P-201ENST00000433481 731 ntBASIC11.64□□□□□ -0.55
UBR4Q5T4S7 TSPY23P-201ENST00000440136 739 ntBASIC11.64□□□□□ -0.55
UBR4Q5T4S7 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
UBR4Q5T4S7 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBR4Q5T4S7 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBR4Q5T4S7 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBR4Q5T4S7 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC11.64□□□□□ -0.55
UBR4Q5T4S7 SAPCD2P2-201ENST00000431719 1174 ntBASIC11.64□□□□□ -0.55
UBR4Q5T4S7 RN7SL510P-201ENST00000581311 263 ntBASIC11.64□□□□□ -0.55
UBR4Q5T4S7 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
UBR4Q5T4S7 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
UBR4Q5T4S7 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
UBR4Q5T4S7 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC11.64□□□□□ -0.55
UBR4Q5T4S7 RBM17P1-201ENST00000453646 1190 ntBASIC11.63□□□□□ -0.55
UBR4Q5T4S7 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBR4Q5T4S7 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC11.63□□□□□ -0.55
UBR4Q5T4S7 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC11.63□□□□□ -0.55
UBR4Q5T4S7 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBR4Q5T4S7 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC11.63□□□□□ -0.55
UBR4Q5T4S7 FGF8-207ENST00000618991 856 ntTSL 3 BASIC11.63□□□□□ -0.55
UBR4Q5T4S7 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
UBR4Q5T4S7 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC11.63□□□□□ -0.55
UBR4Q5T4S7 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
UBR4Q5T4S7 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC11.63□□□□□ -0.55
UBR4Q5T4S7 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
UBR4Q5T4S7 AC139887.4-201ENST00000607877 719 ntBASIC11.63□□□□□ -0.55
UBR4Q5T4S7 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
UBR4Q5T4S7 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC11.63□□□□□ -0.55
UBR4Q5T4S7 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC11.63□□□□□ -0.55
UBR4Q5T4S7 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC11.63□□□□□ -0.55
UBR4Q5T4S7 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBR4Q5T4S7 UNC93B2-201ENST00000285383 730 ntBASIC11.63□□□□□ -0.55
UBR4Q5T4S7 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC11.63□□□□□ -0.55
UBR4Q5T4S7 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBR4Q5T4S7 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBR4Q5T4S7 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 LGALS8-AS1-201ENST00000487567 1457 ntBASIC11.62□□□□□ -0.55
UBR4Q5T4S7 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 GGT1-206ENST00000404223 952 ntTSL 2 BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 KRT17P6-201ENST00000453795 1220 ntBASIC11.62□□□□□ -0.55
UBR4Q5T4S7 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 AL589743.5-201ENST00000616611 1050 ntBASIC11.62□□□□□ -0.55
UBR4Q5T4S7 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC11.62□□□□□ -0.55
UBR4Q5T4S7 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 MIR3197-201ENST00000582241 73 ntBASIC11.61□□□□□ -0.55
UBR4Q5T4S7 GXYLT1P4-201ENST00000613576 1192 ntBASIC11.61□□□□□ -0.55
UBR4Q5T4S7 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 AL359075.1-203ENST00000462729 1002 ntBASIC11.61□□□□□ -0.55
UBR4Q5T4S7 AC128688.1-201ENST00000487626 519 ntBASIC11.61□□□□□ -0.55
UBR4Q5T4S7 AC063952.2-201ENST00000498792 1227 ntBASIC11.61□□□□□ -0.55
UBR4Q5T4S7 CD81-212ENST00000526072 1172 ntTSL 5 BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
UBR4Q5T4S7 TERC-201ENST00000602385 541 ntBASIC11.6□□□□□ -0.55
UBR4Q5T4S7 MIR6089-201ENST00000616698 64 ntBASIC11.6□□□□□ -0.55
UBR4Q5T4S7 CABP2-204ENST00000636477 941 ntTSL 5 BASIC11.6□□□□□ -0.55
UBR4Q5T4S7 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
UBR4Q5T4S7 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
UBR4Q5T4S7 AL390955.1-201ENST00000428694 934 ntBASIC11.6□□□□□ -0.55
UBR4Q5T4S7 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC11.6□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms