Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
HLA-DQA1P01909 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC15.71■□□□□ 0.1
HLA-DQA1P01909 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HLA-DQA1P01909 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HLA-DQA1P01909 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 AC004448.1-201ENST00000458332 883 ntBASIC15.7■□□□□ 0.1
HLA-DQA1P01909 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 HCG11-201ENST00000411553 5696 ntBASIC15.7■□□□□ 0.1
HLA-DQA1P01909 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
HLA-DQA1P01909 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC15.69■□□□□ 0.1
HLA-DQA1P01909 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC15.69■□□□□ 0.1
HLA-DQA1P01909 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC15.69■□□□□ 0.1
HLA-DQA1P01909 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DQA1P01909 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DQA1P01909 AC026471.6-201ENST00000622954 1905 ntBASIC15.69■□□□□ 0.1
HLA-DQA1P01909 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DQA1P01909 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DQA1P01909 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
HLA-DQA1P01909 GAK-223ENST00000628912 497 ntTSL 5 BASIC15.69■□□□□ 0.1
HLA-DQA1P01909 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DQA1P01909 AC098818.2-201ENST00000564925 2320 ntBASIC15.69■□□□□ 0.1
HLA-DQA1P01909 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DQA1P01909 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC15.69■□□□□ 0.1
HLA-DQA1P01909 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DQA1P01909 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DQA1P01909 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DQA1P01909 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DQA1P01909 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DQA1P01909 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DQA1P01909 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HLA-DQA1P01909 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC15.68■□□□□ 0.1
HLA-DQA1P01909 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 GUK1-208ENST00000366728 842 ntTSL 2 BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms