Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM13O60858 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM13O60858 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM13O60858 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
TRIM13O60858 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM13O60858 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM13O60858 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
TRIM13O60858 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
TRIM13O60858 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.55■□□□□ 0.88
TRIM13O60858 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM13O60858 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.55■□□□□ 0.88
TRIM13O60858 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.55■□□□□ 0.88
TRIM13O60858 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM13O60858 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.55■□□□□ 0.88
TRIM13O60858 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM13O60858 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM13O60858 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM13O60858 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.55■□□□□ 0.88
TRIM13O60858 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM13O60858 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.55■□□□□ 0.88
TRIM13O60858 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
TRIM13O60858 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM13O60858 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.54■□□□□ 0.88
TRIM13O60858 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.54■□□□□ 0.88
TRIM13O60858 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM13O60858 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM13O60858 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM13O60858 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM13O60858 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM13O60858 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM13O60858 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM13O60858 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM13O60858 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.54■□□□□ 0.88
TRIM13O60858 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM13O60858 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
TRIM13O60858 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM13O60858 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM13O60858 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM13O60858 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM13O60858 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
TRIM13O60858 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM13O60858 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM13O60858 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM13O60858 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM13O60858 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM13O60858 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
TRIM13O60858 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM13O60858 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM13O60858 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM13O60858 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM13O60858 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM13O60858 BX842568.3-201ENST00000418104 571 ntBASIC20.53■□□□□ 0.88
TRIM13O60858 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM13O60858 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
TRIM13O60858 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM13O60858 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM13O60858 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.53■□□□□ 0.88
TRIM13O60858 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM13O60858 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM13O60858 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM13O60858 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM13O60858 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM13O60858 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM13O60858 AC009237.3-201ENST00000393279 1427 ntBASIC20.53■□□□□ 0.88
TRIM13O60858 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM13O60858 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM13O60858 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.52■□□□□ 0.88
TRIM13O60858 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM13O60858 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.52■□□□□ 0.88
TRIM13O60858 AC131281.2-201ENST00000520478 145 ntBASIC20.52■□□□□ 0.88
TRIM13O60858 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM13O60858 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
TRIM13O60858 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.52■□□□□ 0.88
TRIM13O60858 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM13O60858 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM13O60858 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM13O60858 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM13O60858 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
TRIM13O60858 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
TRIM13O60858 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
TRIM13O60858 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
TRIM13O60858 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
TRIM13O60858 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM13O60858 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
TRIM13O60858 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM13O60858 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
TRIM13O60858 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM13O60858 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
TRIM13O60858 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM13O60858 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM13O60858 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM13O60858 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM13O60858 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM13O60858 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM13O60858 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM13O60858 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM13O60858 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM13O60858 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM13O60858 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM13O60858 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms