Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNX3O60493 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.63■□□□□ 0.89
SNX3O60493 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNX3O60493 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNX3O60493 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNX3O60493 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.62■□□□□ 0.89
SNX3O60493 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNX3O60493 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.62■□□□□ 0.89
SNX3O60493 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNX3O60493 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.62■□□□□ 0.89
SNX3O60493 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
SNX3O60493 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNX3O60493 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNX3O60493 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNX3O60493 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
SNX3O60493 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNX3O60493 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNX3O60493 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNX3O60493 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SNX3O60493 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNX3O60493 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.62■□□□□ 0.89
SNX3O60493 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNX3O60493 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SNX3O60493 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SNX3O60493 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SNX3O60493 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNX3O60493 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
SNX3O60493 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNX3O60493 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.62■□□□□ 0.89
SNX3O60493 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNX3O60493 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SNX3O60493 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SNX3O60493 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.61■□□□□ 0.89
SNX3O60493 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
SNX3O60493 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SNX3O60493 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SNX3O60493 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SNX3O60493 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.61■□□□□ 0.89
SNX3O60493 AC137630.3-201ENST00000607245 391 ntBASIC20.61■□□□□ 0.89
SNX3O60493 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
SNX3O60493 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SNX3O60493 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
SNX3O60493 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SNX3O60493 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SNX3O60493 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SNX3O60493 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.61■□□□□ 0.89
SNX3O60493 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SNX3O60493 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SNX3O60493 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.6■□□□□ 0.89
SNX3O60493 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
SNX3O60493 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SNX3O60493 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SNX3O60493 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.6■□□□□ 0.89
SNX3O60493 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.6■□□□□ 0.89
SNX3O60493 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.6■□□□□ 0.89
SNX3O60493 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.6■□□□□ 0.89
SNX3O60493 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.6■□□□□ 0.89
SNX3O60493 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.6■□□□□ 0.89
SNX3O60493 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.6■□□□□ 0.89
SNX3O60493 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
SNX3O60493 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
SNX3O60493 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SNX3O60493 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SNX3O60493 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
SNX3O60493 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
SNX3O60493 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SNX3O60493 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SNX3O60493 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.59■□□□□ 0.89
SNX3O60493 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SNX3O60493 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SNX3O60493 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC20.59■□□□□ 0.89
SNX3O60493 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SNX3O60493 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.59■□□□□ 0.89
SNX3O60493 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SNX3O60493 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SNX3O60493 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SNX3O60493 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.59■□□□□ 0.89
SNX3O60493 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
SNX3O60493 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SNX3O60493 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.58■□□□□ 0.89
SNX3O60493 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SNX3O60493 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.89
SNX3O60493 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SNX3O60493 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
SNX3O60493 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
SNX3O60493 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.58■□□□□ 0.88
SNX3O60493 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SNX3O60493 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.58■□□□□ 0.88
SNX3O60493 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SNX3O60493 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SNX3O60493 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
SNX3O60493 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.57■□□□□ 0.88
SNX3O60493 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SNX3O60493 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SNX3O60493 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.57■□□□□ 0.88
SNX3O60493 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
SNX3O60493 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SNX3O60493 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SNX3O60493 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SNX3O60493 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms