Protein–RNA interactions for Protein: Q8N1V8

LINC01561, Uncharacterized protein encoded by LINC01561, humanhuman

Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01561Q8N1V8 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
LINC01561Q8N1V8 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC01561Q8N1V8 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC01561Q8N1V8 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LINC01561Q8N1V8 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC01561Q8N1V8 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC14.04□□□□□ -0.16
LINC01561Q8N1V8 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LINC01561Q8N1V8 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC01561Q8N1V8 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC01561Q8N1V8 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC14.04□□□□□ -0.16
LINC01561Q8N1V8 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LINC01561Q8N1V8 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 AC007952.6-201ENST00000573168 2673 ntBASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 AC003957.1-201ENST00000625108 2673 ntBASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 QDPR-206ENST00000508623 601 ntTSL 3 BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC14.03□□□□□ -0.16
LINC01561Q8N1V8 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LINC01561Q8N1V8 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
LINC01561Q8N1V8 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LINC01561Q8N1V8 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.16
LINC01561Q8N1V8 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC14.02□□□□□ -0.16
LINC01561Q8N1V8 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LINC01561Q8N1V8 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
LINC01561Q8N1V8 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC14.02□□□□□ -0.16
LINC01561Q8N1V8 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
LINC01561Q8N1V8 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
LINC01561Q8N1V8 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
LINC01561Q8N1V8 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC14.02□□□□□ -0.16
LINC01561Q8N1V8 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
LINC01561Q8N1V8 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC14.02□□□□□ -0.16
LINC01561Q8N1V8 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
LINC01561Q8N1V8 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LINC01561Q8N1V8 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC14.02□□□□□ -0.17
LINC01561Q8N1V8 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LINC01561Q8N1V8 FXN-202ENST00000396364 980 ntTSL 5 BASIC14.02□□□□□ -0.17
LINC01561Q8N1V8 SMUG1P1-201ENST00000590640 811 ntBASIC14.02□□□□□ -0.17
LINC01561Q8N1V8 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LINC01561Q8N1V8 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LINC01561Q8N1V8 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC14.02□□□□□ -0.17
LINC01561Q8N1V8 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LINC01561Q8N1V8 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC14.02□□□□□ -0.17
LINC01561Q8N1V8 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
LINC01561Q8N1V8 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 GUSBP5-201ENST00000418136 578 ntBASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 GRAMD4P7-201ENST00000578182 1232 ntBASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 PLK5-205ENST00000642079 1969 ntBASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC01561Q8N1V8 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01561Q8N1V8 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01561Q8N1V8 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01561Q8N1V8 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC14□□□□□ -0.17
LINC01561Q8N1V8 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC14□□□□□ -0.17
LINC01561Q8N1V8 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01561Q8N1V8 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01561Q8N1V8 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
LINC01561Q8N1V8 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC14□□□□□ -0.17
LINC01561Q8N1V8 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC14□□□□□ -0.17
LINC01561Q8N1V8 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01561Q8N1V8 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01561Q8N1V8 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC14□□□□□ -0.17
LINC01561Q8N1V8 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms