Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MGAT4B-222ENST00000523329 543 ntTSL 321.24■□□□□ 0.999e-6■■■□□ 18.1
YBX3P16989 F12-206ENST00000514943 429 ntTSL 321.22■□□□□ 0.999e-6■■■□□ 18.1
YBX3P16989 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC21.16■□□□□ 0.989e-6■■■□□ 18.1
YBX3P16989 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.889e-6■■■□□ 18.1
YBX3P16989 F12-202ENST00000502854 1480 ntTSL 520.26■□□□□ 0.839e-6■■■□□ 18.1
YBX3P16989 RPS6KA3-202ENST00000438357 530 ntTSL 520.26■□□□□ 0.839e-6■■■□□ 18.1
YBX3P16989 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC20.26■□□□□ 0.839e-6■■■□□ 18.1
YBX3P16989 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.839e-6■■■□□ 18.1
YBX3P16989 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.749e-6■■■□□ 18.1
YBX3P16989 F12-203ENST00000503736 748 ntTSL 319.64■□□□□ 0.739e-6■■■□□ 18.1
YBX3P16989 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.719e-6■■■□□ 18.1
YBX3P16989 ZDHHC7-208ENST00000569488 620 ntTSL 318.64■□□□□ 0.579e-6■■■□□ 18.1
YBX3P16989 WDR92-206ENST00000492039 1280 ntTSL 218.52■□□□□ 0.569e-6■■■□□ 18.1
YBX3P16989 GRPEL1-202ENST00000504920 2195 ntTSL 217.94■□□□□ 0.469e-6■■■□□ 18.1
YBX3P16989 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.451e-8■■■□□ 18.1
YBX3P16989 ZDHHC7-202ENST00000344861 2727 ntTSL 1 (best)17.47■□□□□ 0.399e-6■■■□□ 18.1
YBX3P16989 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.43■□□□□ 0.389e-6■■■□□ 18.1
YBX3P16989 GRPEL1-203ENST00000509696 884 ntTSL 217.28■□□□□ 0.369e-6■■■□□ 18.1
YBX3P16989 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.319e-6■■■□□ 18.1
YBX3P16989 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.01■□□□□ 0.319e-6■■■□□ 18.1
YBX3P16989 SLC39A14-211ENST00000522881 560 ntTSL 516.17■□□□□ 0.189e-6■■■□□ 18.1
YBX3P16989 ANO6-204ENST00000426898 2780 ntTSL 215.98■□□□□ 0.159e-6■■■□□ 18.1
YBX3P16989 HERC1-202ENST00000558324 828 ntTSL 515.97■□□□□ 0.159e-6■■■□□ 18.1
YBX3P16989 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.099e-6■■■□□ 18.1
YBX3P16989 RPS6KA3-206ENST00000492128 553 ntTSL 415.55■□□□□ 0.089e-6■■■□□ 18.1
YBX3P16989 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.089e-6■■■□□ 18.1
YBX3P16989 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.22■□□□□ 0.039e-6■■■□□ 18.1
YBX3P16989 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC15.21■□□□□ 0.039e-6■■■□□ 18.1
YBX3P16989 DDX50-201ENST00000373585 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.019e-6■■■□□ 18.1
YBX3P16989 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -09e-6■■■□□ 18.1
YBX3P16989 ZDHHC7-207ENST00000569377 608 ntTSL 214.72□□□□□ -0.059e-6■■■□□ 18.1
YBX3P16989 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC14.23□□□□□ -0.139e-6■■■□□ 18.1
YBX3P16989 SKA3-203ENST00000400018 2745 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.186e-7■■■□□ 18.1
YBX3P16989 WDR92-203ENST00000409164 1517 ntTSL 1 (best) BASIC13.61□□□□□ -0.239e-6■■■□□ 18.1
YBX3P16989 ZDHHC7-201ENST00000313732 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.239e-6■■■□□ 18.1
YBX3P16989 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.239e-6■■■□□ 18.1
YBX3P16989 SKA3-202ENST00000314759 2919 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.246e-7■■■□□ 18.1
YBX3P16989 SKA3-201ENST00000298260 2803 ntTSL 213.54□□□□□ -0.246e-7■■■□□ 18.1
YBX3P16989 TRAPPC3-205ENST00000462715 2428 ntTSL 213.43□□□□□ -0.269e-6■■■□□ 18.1
YBX3P16989 WDR92-201ENST00000295121 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.279e-6■■■□□ 18.1
YBX3P16989 PTCD1-201ENST00000292478 5582 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.329e-6■■■□□ 18.1
YBX3P16989 HERC1-212ENST00000561348 588 ntTSL 213.08□□□□□ -0.329e-6■■■□□ 18.1
YBX3P16989 CNOT9-202ENST00000295701 1126 ntTSL 1 (best) BASIC12.96□□□□□ -0.339e-6■■■□□ 18.1
YBX3P16989 SLC39A14-210ENST00000520832 578 ntTSL 412.7□□□□□ -0.389e-6■■■□□ 18.1
YBX3P16989 GRPEL1-201ENST00000264954 2775 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.49e-6■■■□□ 18.1
YBX3P16989 SLC39A14-208ENST00000519960 467 ntTSL 411.83□□□□□ -0.529e-6■■■□□ 18.1
YBX3P16989 C7orf71-202ENST00000614528 1963 ntTSL 1 (best)11.76□□□□□ -0.539e-6■■■□□ 18.1
YBX3P16989 MGME1-205ENST00000467391 740 ntTSL 1 (best)11.61□□□□□ -0.559e-6■■■□□ 18.1
YBX3P16989 MGME1-204ENST00000463219 571 ntTSL 311.42□□□□□ -0.589e-6■■■□□ 18.1
YBX3P16989 WDR92-202ENST00000406245 1401 ntTSL 1 (best) BASIC11.38□□□□□ -0.599e-6■■■□□ 18.1
YBX3P16989 TFDP1-207ENST00000494812 736 ntTSL 311.21□□□□□ -0.619e-6■■■□□ 18.1
YBX3P16989 C7orf71-201ENST00000409974 1956 ntTSL 2 BASIC11.1□□□□□ -0.639e-6■■■□□ 18.1
YBX3P16989 AHCTF1-202ENST00000366508 8751 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.639e-6■■■□□ 18.1
YBX3P16989 MTR-205ENST00000535889 10405 ntTSL 1 (best) BASIC11.1□□□□□ -0.639e-6■■■□□ 18.1
YBX3P16989 F8-204ENST00000453950 545 ntTSL 310.86□□□□□ -0.679e-6■■■□□ 18.1
YBX3P16989 MTR-202ENST00000366577 10529 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.699e-6■■■□□ 18.1
YBX3P16989 SMG1-205ENST00000561947 2664 ntTSL 510.58□□□□□ -0.729e-6■■■□□ 18.1
YBX3P16989 CNOT9-203ENST00000418808 907 ntTSL 310.57□□□□□ -0.729e-6■■■□□ 18.1
YBX3P16989 DNA2-204ENST00000440722 1172 ntTSL 1 (best)8.81□□□□□ -19e-6■■■□□ 18.1
YBX3P16989 DDX50-204ENST00000471475 888 ntTSL 58.35□□□□□ -1.079e-6■■■□□ 18.1
YBX3P16989 DHX32-202ENST00000368721 2389 ntTSL 1 (best) BASIC8.12□□□□□ -1.119e-6■■■□□ 18.1
YBX3P16989 SMG1-215ENST00000568239 2978 ntTSL 1 (best)8□□□□□ -1.139e-6■■■□□ 18.1
YBX3P16989 CNOT9-206ENST00000473626 556 ntTSL 47.66□□□□□ -1.189e-6■■■□□ 18.1
YBX3P16989 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC7.62□□□□□ -1.199e-6■■■□□ 18.1
YBX3P16989 CWF19L1-202ENST00000466408 447 ntTSL 27.26□□□□□ -1.259e-6■■■□□ 18.1
YBX3P16989 GLT8D1-209ENST00000481643 796 ntTSL 37.23□□□□□ -1.259e-6■■■□□ 18.1
YBX3P16989 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.259e-6■■■□□ 18.1
YBX3P16989 ZMAT2-203ENST00000519913 521 ntTSL 47.22□□□□□ -1.259e-6■■■□□ 18.1
YBX3P16989 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC6.09□□□□□ -1.439e-6■■■□□ 18.1
YBX3P16989 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC6.02□□□□□ -1.459e-6■■■□□ 18.1
YBX3P16989 ZDHHC7-205ENST00000566909 582 ntTSL 25.78□□□□□ -1.489e-6■■■□□ 18.1
YBX3P16989 ATF7IP2-215ENST00000568027 3406 ntTSL 1 (best)5.26□□□□□ -1.579e-6■■■□□ 18.1
YBX3P16989 SMG1-207ENST00000563235 2910 ntTSL 25□□□□□ -1.619e-6■■■□□ 18.1
YBX3P16989 RPL36AP13-201ENST00000457490 317 ntBASIC4.8□□□□□ -1.649e-6■■■□□ 18.1
YBX3P16989 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.659e-6■■■□□ 18.1
YBX3P16989 RPS6KA3-203ENST00000457145 804 ntTSL 24.74□□□□□ -1.659e-6■■■□□ 18.1
YBX3P16989 CWF19L1-203ENST00000466955 659 ntTSL 34.38□□□□□ -1.719e-6■■■□□ 18.1
YBX3P16989 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.739e-6■■■□□ 18.1
YBX3P16989 AHCTF1-206ENST00000483900 3451 ntTSL 23.19□□□□□ -1.99e-6■■■□□ 18.1
YBX3P16989 AHCTF1-203ENST00000470300 7041 ntTSL 1 (best)1.58□□□□□ -2.169e-6■■■□□ 18.1
YBX3P16989 EIF3L-204ENST00000414316 581 ntTSL 58□□□□□ -1.131e-10■■■□□ 18.1
YBX3P16989 CNOT1-212ENST00000567285 722 ntTSL 49.83□□□□□ -0.844e-7■■■□□ 18
YBX3P16989 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.57e-8■■■□□ 18
YBX3P16989 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.27e-8■■■□□ 18
YBX3P16989 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 17e-8■■■□□ 18
YBX3P16989 RAB5C-204ENST00000547517 1167 ntTSL 1 (best) BASIC15.39■□□□□ 0.057e-8■■■□□ 18
YBX3P16989 AC099811.2-202ENST00000592248 694 ntTSL 312.27□□□□□ -0.457e-8■■■□□ 18
YBX3P16989 GNB1-204ENST00000439272 602 ntTSL 512.17□□□□□ -0.466e-13■■■□□ 18
YBX3P16989 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC28.87■■■□□ 2.218e-27■■■□□ 18
YBX3P16989 DPM2-202ENST00000373110 738 ntTSL 2 BASIC19.91■□□□□ 0.784e-7■■■□□ 18
YBX3P16989 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC26.05■■□□□ 1.764e-9■■■□□ 18
YBX3P16989 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.494e-9■■■□□ 18
YBX3P16989 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.234e-9■■■□□ 18
YBX3P16989 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC20.7■□□□□ 0.94e-9■■■□□ 18
YBX3P16989 SYNGR2-204ENST00000589168 2125 ntTSL 220.39■□□□□ 0.864e-9■■■□□ 18
YBX3P16989 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.77■□□□□ 0.284e-9■■■□□ 18
YBX3P16989 SYNGR2-209ENST00000592456 3036 nt12.54□□□□□ -0.44e-9■■■□□ 18
YBX3P16989 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC13.62□□□□□ -0.235e-7■■■□□ 18
YBX3P16989 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC13.54□□□□□ -0.245e-7■■■□□ 18
YBX3P16989 ARF5-204ENST00000463733 1509 ntTSL 524.46■■□□□ 1.513e-9■■■□□ 18
Retrieved 100 of 29,075 protein–RNA pairs in 398.6 ms