RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 NISCHQ9Y2I1 1504 aa25.76■■□□□ 1.71
SKA3-201ENST00000298260 HRCP23327 699 aa22.94■■□□□ 1.26
SKA3-201ENST00000298260 PPARGC1BQ86YN6 1023 aaKnown RBP22.82■■□□□ 1.24
SKA3-201ENST00000298260 SHROOM4Q9ULL8 1493 aa22.81■■□□□ 1.24
SKA3-201ENST00000298260 SUPT5HO00267 1087 aaKnown RBP22.72■■□□□ 1.23
SKA3-201ENST00000298260 PCGF6Q9BYE7 350 aa22.65■■□□□ 1.22
SKA3-201ENST00000298260 MYO15BQ96JP2 1530 aa22.42■■□□□ 1.18
SKA3-201ENST00000298260 CHIC1Q5VXU3 224 aa22.18■■□□□ 1.14
SKA3-201ENST00000298260 DCAF8L2P0C7V8 631 aa22.12■■□□□ 1.13
SKA3-201ENST00000298260 CCDC180Q9P1Z9 1646 aa22.09■■□□□ 1.13
SKA3-201ENST00000298260 PELP1Q8IZL8 1130 aaKnown RBP21.93■■□□□ 1.1
SKA3-201ENST00000298260 LOC105371045A0A1W2PR82 267 aa21.91■■□□□ 1.1
SKA3-201ENST00000298260 SCAF1Q9H7N4 1312 aaKnown RBP21.9■■□□□ 1.1
SKA3-201ENST00000298260 TRIM26Q12899 539 aaPredicted RBP21.63■■□□□ 1.05
SKA3-201ENST00000298260 DCAF1Q9Y4B6 1507 aa21.61■■□□□ 1.05
SKA3-201ENST00000298260 ZCCHC6Q5VYS8 1495 aaKnown RBP21.59■■□□□ 1.05
SKA3-201ENST00000298260 ABCC9O60706 1549 aa21.58■■□□□ 1.05
SKA3-201ENST00000298260 ZEB1P37275 1124 aaPredicted RBP21.29■■□□□ 1
SKA3-201ENST00000298260 NEUROD1Q13562 356 aa21.28■■□□□ 1
SKA3-201ENST00000298260 EHMT2Q96KQ7 1210 aa21.25■□□□□ 0.99
SKA3-201ENST00000298260 ACIN1Q9UKV3 1341 aaKnown RBP21.2■□□□□ 0.98
SKA3-201ENST00000298260 GTF3C3Q9Y5Q9 886 aa21.17■□□□□ 0.98
SKA3-201ENST00000298260 FAM9AQ8IZU1 332 aaPredicted RBP21.11■□□□□ 0.97
SKA3-201ENST00000298260 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.99■□□□□ 0.95
SKA3-201ENST00000298260 MYT1Q01538 1121 aa20.96■□□□□ 0.95
SKA3-201ENST00000298260 SCRIBQ14160 1630 aa20.91■□□□□ 0.94
SKA3-201ENST00000298260 DIEXFQ68CQ4 756 aaKnown RBP20.85■□□□□ 0.93
SKA3-201ENST00000298260 CCER1Q8TC90 406 aaPredicted RBP20.82■□□□□ 0.92
SKA3-201ENST00000298260 CENPBP07199 599 aaPredicted RBP20.81■□□□□ 0.92
SKA3-201ENST00000298260 TRIM41Q8WV44 630 aa20.81■□□□□ 0.92
SKA3-201ENST00000298260 YTHDC1Q96MU7 727 aaKnown RBP20.78■□□□□ 0.92
SKA3-201ENST00000298260 TTBK1Q5TCY1 1321 aaPredicted RBP20.72■□□□□ 0.91
SKA3-201ENST00000298260 NACADO15069 1562 aa20.67■□□□□ 0.9
SKA3-201ENST00000298260 PABPN1Q86U42 306 aaKnown RBP eCLIP20.6■□□□□ 0.89
SKA3-201ENST00000298260 RB1CC1Q8TDY2 1594 aa20.58■□□□□ 0.88
SKA3-201ENST00000298260 MIER1Q8N108 512 aa20.39■□□□□ 0.85
SKA3-201ENST00000298260 ZNF316A6NFI3 1004 aaPredicted RBP20.34■□□□□ 0.85
SKA3-201ENST00000298260 CECR2Q9BXF3 1484 aa20.33■□□□□ 0.85
SKA3-201ENST00000298260 RSF1Q96T23 1441 aaPredicted RBP20.3■□□□□ 0.84
SKA3-201ENST00000298260 UNC13AQ9UPW8 1703 aa20.29■□□□□ 0.84
SKA3-201ENST00000298260 BCL11AQ9H165 835 aa20.11■□□□□ 0.81
SKA3-201ENST00000298260 MROH2BQ7Z745 1585 aa20.1■□□□□ 0.81
SKA3-201ENST00000298260 BICRAQ9NZM4 1560 aa20.09■□□□□ 0.81
SKA3-201ENST00000298260 SUPT16HQ9Y5B9 1047 aaKnown RBP20.04■□□□□ 0.8
SKA3-201ENST00000298260 HNRNPUL2Q1KMD3 747 aaKnown RBP20.03■□□□□ 0.8
SKA3-201ENST00000298260 TSHZ2Q9NRE2 1034 aa19.99■□□□□ 0.79
SKA3-201ENST00000298260 ANP32EQ9BTT0 268 aa19.98■□□□□ 0.79
SKA3-201ENST00000298260 WIZO95785 1651 aa19.96■□□□□ 0.79
SKA3-201ENST00000298260 CSRNP3Q8WYN3 585 aa19.95■□□□□ 0.78
SKA3-201ENST00000298260 CEP162Q5TB80 1403 aa19.86■□□□□ 0.77
SKA3-201ENST00000298260 BCANQ96GW7 911 aa19.86■□□□□ 0.77
SKA3-201ENST00000298260 BAZ1AQ9NRL2 1556 aaPredicted RBP19.81■□□□□ 0.76
SKA3-201ENST00000298260 UBTFP17480 764 aaKnown RBP19.8■□□□□ 0.76
SKA3-201ENST00000298260 WRNQ14191 1432 aaPredicted RBP eCLIP19.78■□□□□ 0.76
SKA3-201ENST00000298260 SMARCA4P51532 1647 aa19.78■□□□□ 0.76
SKA3-201ENST00000298260 KCNH8Q96L42 1107 aa19.73■□□□□ 0.75
SKA3-201ENST00000298260 CCDC88BA6NC98 1476 aa19.72■□□□□ 0.75
SKA3-201ENST00000298260 SOGA1O94964 1423 aa19.7■□□□□ 0.74
SKA3-201ENST00000298260 ABCC8Q09428 1581 aa19.7■□□□□ 0.74
SKA3-201ENST00000298260 RANGAP1P46060 587 aaPredicted RBP19.65■□□□□ 0.74
SKA3-201ENST00000298260 RUSC2Q8N2Y8 1516 aa19.63■□□□□ 0.73
SKA3-201ENST00000298260 TNIKQ9UKE5 1360 aa19.59■□□□□ 0.73
SKA3-201ENST00000298260 FKBP8Q14318 412 aa19.57■□□□□ 0.72
SKA3-201ENST00000298260 ITGAEP38570 1179 aa19.55■□□□□ 0.72
SKA3-201ENST00000298260 CLSPNQ9HAW4 1339 aa19.54■□□□□ 0.72
SKA3-201ENST00000298260 RBM19Q9Y4C8 960 aaKnown RBP19.51■□□□□ 0.71
SKA3-201ENST00000298260 ATAD2BQ9ULI0 1458 aa19.51■□□□□ 0.71
SKA3-201ENST00000298260 EIF4G1Q04637 1599 aaKnown RBP19.5■□□□□ 0.71
SKA3-201ENST00000298260 TOP2AP11388 1531 aaKnown RBP19.48■□□□□ 0.71
SKA3-201ENST00000298260 BAZ1BQ9UIG0 1483 aaKnown RBP19.44■□□□□ 0.7
SKA3-201ENST00000298260 MSH5O43196 834 aa19.42■□□□□ 0.7
SKA3-201ENST00000298260 SMARCA2P51531 1590 aa19.41■□□□□ 0.7
SKA3-201ENST00000298260 APLP2Q06481 763 aa19.38■□□□□ 0.69
SKA3-201ENST00000298260 DHX57Q6P158 1386 aaKnown RBP19.38■□□□□ 0.69
SKA3-201ENST00000298260 DNAJC5BQ9UF47 199 aa19.37■□□□□ 0.69
SKA3-201ENST00000298260 TRIM52Q96A61 297 aa19.33■□□□□ 0.69
SKA3-201ENST00000298260 GOLGA3Q08378 1498 aa19.33■□□□□ 0.68
SKA3-201ENST00000298260 CLIP1P30622 1438 aa19.3■□□□□ 0.68
SKA3-201ENST00000298260 PRKCSHP14314 528 aaPredicted RBP19.29■□□□□ 0.68
SKA3-201ENST00000298260 DDX10Q13206 875 aaKnown RBP19.29■□□□□ 0.68
SKA3-201ENST00000298260 PEG3Q9GZU2 1588 aa19.28■□□□□ 0.68
SKA3-201ENST00000298260 CC2D2AQ9P2K1 1620 aa19.27■□□□□ 0.67
SKA3-201ENST00000298260 HIRIP3Q9BW71 556 aaPredicted RBP19.26■□□□□ 0.67
SKA3-201ENST00000298260 NEFLP07196 543 aa19.23■□□□□ 0.67
SKA3-201ENST00000298260 IRX6P78412 446 aaPredicted RBP19.22■□□□□ 0.67
SKA3-201ENST00000298260 VPS8Q8N3P4 1428 aa19.21■□□□□ 0.67
SKA3-201ENST00000298260 NCAPD3P42695 1498 aa19.19■□□□□ 0.66
SKA3-201ENST00000298260 KANK4Q5T7N3 995 aaPredicted RBP19.19■□□□□ 0.66
SKA3-201ENST00000298260 EEA1Q15075 1411 aa19.17■□□□□ 0.66
SKA3-201ENST00000298260 ERICH6Q7L0X2 663 aa19.13■□□□□ 0.65
SKA3-201ENST00000298260 CEP164Q9UPV0 1460 aa19.09■□□□□ 0.65
SKA3-201ENST00000298260 RAPGEF2Q9Y4G8 1499 aa19.09■□□□□ 0.65
SKA3-201ENST00000298260 SIN3AQ96ST3 1273 aa19.06■□□□□ 0.64
SKA3-201ENST00000298260 HMGXB3Q12766 1538 aa19.06■□□□□ 0.64
SKA3-201ENST00000298260 KIF21BO75037 1637 aa19.04■□□□□ 0.64
SKA3-201ENST00000298260 DEKP35659 375 aaKnown RBP19.03■□□□□ 0.64
SKA3-201ENST00000298260 ANO8Q9HCE9 1232 aaPredicted RBP19■□□□□ 0.63
SKA3-201ENST00000298260 PPP1R15AO75807 674 aaPredicted RBP18.97■□□□□ 0.63
SKA3-201ENST00000298260 NESP48681 1621 aa18.97■□□□□ 0.63
SKA3-201ENST00000298260 NBR1Q14596 966 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms