RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 DCAF8L2P0C7V8 631 aa21.99■■□□□ 1.11
PTCD1-201ENST00000292478 NISCHQ9Y2I1 1504 aa21.79■■□□□ 1.08
PTCD1-201ENST00000292478 SUPT5HO00267 1087 aaKnown RBP21.03■□□□□ 0.96
PTCD1-201ENST00000292478 SHROOM4Q9ULL8 1493 aa20.67■□□□□ 0.9
PTCD1-201ENST00000292478 APLP2Q06481 763 aa20.08■□□□□ 0.8
PTCD1-201ENST00000292478 EHMT2Q96KQ7 1210 aa20.03■□□□□ 0.8
PTCD1-201ENST00000292478 PELP1Q8IZL8 1130 aaKnown RBP20■□□□□ 0.79
PTCD1-201ENST00000292478 FAM9AQ8IZU1 332 aaPredicted RBP19.79■□□□□ 0.76
PTCD1-201ENST00000292478 ZEB1P37275 1124 aaPredicted RBP19.65■□□□□ 0.74
PTCD1-201ENST00000292478 TRIM41Q8WV44 630 aa19.64■□□□□ 0.73
PTCD1-201ENST00000292478 PCGF6Q9BYE7 350 aa19.63■□□□□ 0.73
PTCD1-201ENST00000292478 TTBK1Q5TCY1 1321 aaPredicted RBP19.4■□□□□ 0.7
PTCD1-201ENST00000292478 CENPBP07199 599 aaPredicted RBP19.38■□□□□ 0.69
PTCD1-201ENST00000292478 CCER1Q8TC90 406 aaPredicted RBP19.35■□□□□ 0.69
PTCD1-201ENST00000292478 UBTFP17480 764 aaKnown RBP19.32■□□□□ 0.68
PTCD1-201ENST00000292478 RANGAP1P46060 587 aaPredicted RBP19.25■□□□□ 0.67
PTCD1-201ENST00000292478 ATP1B4Q9UN42 357 aaPredicted RBP19.17■□□□□ 0.66
PTCD1-201ENST00000292478 TRIM26Q12899 539 aaPredicted RBP19.06■□□□□ 0.64
PTCD1-201ENST00000292478 ERICH6Q7L0X2 663 aa18.97■□□□□ 0.63
PTCD1-201ENST00000292478 NEFLP07196 543 aa18.91■□□□□ 0.62
PTCD1-201ENST00000292478 CHIC1Q5VXU3 224 aa18.89■□□□□ 0.61
PTCD1-201ENST00000292478 HRCP23327 699 aa18.8■□□□□ 0.6
PTCD1-201ENST00000292478 PPARGC1BQ86YN6 1023 aaKnown RBP18.76■□□□□ 0.59
PTCD1-201ENST00000292478 YTHDC1Q96MU7 727 aaKnown RBP18.7■□□□□ 0.58
PTCD1-201ENST00000292478 LOC105371045A0A1W2PR82 267 aa18.68■□□□□ 0.58
PTCD1-201ENST00000292478 MYT1Q01538 1121 aa18.68■□□□□ 0.58
PTCD1-201ENST00000292478 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.55■□□□□ 0.56
PTCD1-201ENST00000292478 HNRNPUL2Q1KMD3 747 aaKnown RBP18.55■□□□□ 0.56
PTCD1-201ENST00000292478 ITGAEP38570 1179 aa18.55■□□□□ 0.56
PTCD1-201ENST00000292478 ABCC9O60706 1549 aa18.46■□□□□ 0.55
PTCD1-201ENST00000292478 MYT1LQ9UL68 1186 aa18.41■□□□□ 0.54
PTCD1-201ENST00000292478 POLR3GLQ9BT43 218 aa18.32■□□□□ 0.52
PTCD1-201ENST00000292478 PABPN1Q86U42 306 aaKnown RBP eCLIP18.29■□□□□ 0.52
PTCD1-201ENST00000292478 DAXXQ9UER7 740 aaPredicted RBP18.27■□□□□ 0.51
PTCD1-201ENST00000292478 DIEXFQ68CQ4 756 aaKnown RBP18.26■□□□□ 0.51
PTCD1-201ENST00000292478 FAM50AQ14320 339 aaKnown RBP18.22■□□□□ 0.51
PTCD1-201ENST00000292478 TRIM52Q96A61 297 aa18.11■□□□□ 0.49
PTCD1-201ENST00000292478 ZCCHC6Q5VYS8 1495 aaKnown RBP18.08■□□□□ 0.49
PTCD1-201ENST00000292478 CSRNP3Q8WYN3 585 aa18.05■□□□□ 0.48
PTCD1-201ENST00000292478 NEUROD1Q13562 356 aa18■□□□□ 0.47
PTCD1-201ENST00000292478 CNGB1Q14028 1251 aaPredicted RBP17.99■□□□□ 0.47
PTCD1-201ENST00000292478 SLC4A1APQ9BWU0 796 aaKnown RBP17.97■□□□□ 0.47
PTCD1-201ENST00000292478 CCDC180Q9P1Z9 1646 aa17.97■□□□□ 0.47
PTCD1-201ENST00000292478 ANP32CO43423 234 aa17.96■□□□□ 0.47
PTCD1-201ENST00000292478 ZNF316A6NFI3 1004 aaPredicted RBP17.95■□□□□ 0.46
PTCD1-201ENST00000292478 SCRIBQ14160 1630 aa17.91■□□□□ 0.46
PTCD1-201ENST00000292478 CLSPNQ9HAW4 1339 aa17.86■□□□□ 0.45
PTCD1-201ENST00000292478 RTL5Q5HYW3 569 aaPredicted RBP17.85■□□□□ 0.45
PTCD1-201ENST00000292478 DCAF1Q9Y4B6 1507 aa17.85■□□□□ 0.45
PTCD1-201ENST00000292478 FBLN2P98095 1184 aa17.8■□□□□ 0.44
PTCD1-201ENST00000292478 CDK11AQ9UQ88 783 aaPredicted RBP17.8■□□□□ 0.44
PTCD1-201ENST00000292478 ZNF326Q5BKZ1 582 aaKnown RBP17.77■□□□□ 0.44
PTCD1-201ENST00000292478 GTF3C3Q9Y5Q9 886 aa17.77■□□□□ 0.43
PTCD1-201ENST00000292478 P3H3Q8IVL6 736 aa17.73■□□□□ 0.43
PTCD1-201ENST00000292478 ACIN1Q9UKV3 1341 aaKnown RBP17.65■□□□□ 0.42
PTCD1-201ENST00000292478 ZBTB47Q9UFB7 747 aaPredicted RBP17.62■□□□□ 0.41
PTCD1-201ENST00000292478 BCANQ96GW7 911 aa17.62■□□□□ 0.41
PTCD1-201ENST00000292478 TONSLQ96HA7 1378 aa17.6■□□□□ 0.41
PTCD1-201ENST00000292478 NEFMP07197 916 aa17.58■□□□□ 0.41
PTCD1-201ENST00000292478 ZNF777Q9ULD5 760 aaPredicted RBP17.58■□□□□ 0.41
PTCD1-201ENST00000292478 RB1CC1Q8TDY2 1594 aa17.57■□□□□ 0.4
PTCD1-201ENST00000292478 EEA1Q15075 1411 aa17.55■□□□□ 0.4
PTCD1-201ENST00000292478 ARID3CA6NKF2 412 aa17.55■□□□□ 0.4
PTCD1-201ENST00000292478 CANXP27824 592 aaKnown RBP17.54■□□□□ 0.4
PTCD1-201ENST00000292478 NACADO15069 1562 aa17.46■□□□□ 0.39
PTCD1-201ENST00000292478 CLIP1P30622 1438 aa17.44■□□□□ 0.38
PTCD1-201ENST00000292478 RSF1Q96T23 1441 aaPredicted RBP17.44■□□□□ 0.38
PTCD1-201ENST00000292478 ANP32AP39687 249 aaKnown RBP17.42■□□□□ 0.38
PTCD1-201ENST00000292478 GOLGA3Q08378 1498 aa17.4■□□□□ 0.38
PTCD1-201ENST00000292478 MTUS2Q5JR59 1369 aa17.39■□□□□ 0.37
PTCD1-201ENST00000292478 NPM1P06748 294 aaKnown RBP eCLIP17.37■□□□□ 0.37
PTCD1-201ENST00000292478 ESF1Q9H501 851 aaKnown RBP17.35■□□□□ 0.37
PTCD1-201ENST00000292478 DDX10Q13206 875 aaKnown RBP17.34■□□□□ 0.37
PTCD1-201ENST00000292478 TSPY4P0CV99 314 aa17.33■□□□□ 0.37
PTCD1-201ENST00000292478 TSPY10P0CW01 314 aa17.33■□□□□ 0.37
PTCD1-201ENST00000292478 HNRNPUQ00839 825 aaKnown RBP eCLIP17.32■□□□□ 0.36
PTCD1-201ENST00000292478 FKBP8Q14318 412 aa17.3■□□□□ 0.36
PTCD1-201ENST00000292478 WRNQ14191 1432 aaPredicted RBP eCLIP17.3■□□□□ 0.36
PTCD1-201ENST00000292478 CEP162Q5TB80 1403 aa17.3■□□□□ 0.36
PTCD1-201ENST00000292478 CHIC2Q9UKJ5 165 aa17.29■□□□□ 0.36
PTCD1-201ENST00000292478 SLC24A1O60721 1099 aa17.28■□□□□ 0.36
PTCD1-201ENST00000292478 STAG3Q9UJ98 1225 aa17.27■□□□□ 0.35
PTCD1-201ENST00000292478 BAZ1BQ9UIG0 1483 aaKnown RBP17.26■□□□□ 0.35
PTCD1-201ENST00000292478 TNIKQ9UKE5 1360 aa17.26■□□□□ 0.35
PTCD1-201ENST00000292478 CHGAP10645 457 aaKnown RBP17.26■□□□□ 0.35
PTCD1-201ENST00000292478 CHMP7Q8WUX9 453 aaPredicted RBP17.25■□□□□ 0.35
PTCD1-201ENST00000292478 CEP164Q9UPV0 1460 aa17.24■□□□□ 0.35
PTCD1-201ENST00000292478 FAM9BQ8IZU0 186 aa17.24■□□□□ 0.35
PTCD1-201ENST00000292478 TMC1Q8TDI8 760 aa17.24■□□□□ 0.35
PTCD1-201ENST00000292478 KIF27Q86VH2 1401 aa17.23■□□□□ 0.35
PTCD1-201ENST00000292478 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.23■□□□□ 0.35
PTCD1-201ENST00000292478 BAZ1AQ9NRL2 1556 aaPredicted RBP17.21■□□□□ 0.35
PTCD1-201ENST00000292478 MYO15BQ96JP2 1530 aa17.21■□□□□ 0.35
PTCD1-201ENST00000292478 UPF2Q9HAU5 1272 aaKnown RBP17.19■□□□□ 0.34
PTCD1-201ENST00000292478 EIF4G2P78344 907 aaKnown RBP eCLIP17.18■□□□□ 0.34
PTCD1-201ENST00000292478 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.18■□□□□ 0.34
PTCD1-201ENST00000292478 WDR43Q15061 677 aaKnown RBP eCLIP17.16■□□□□ 0.34
PTCD1-201ENST00000292478 MRS2Q9HD23 443 aa17.16■□□□□ 0.34
PTCD1-201ENST00000292478 NPM2Q86SE8 214 aaKnown RBP17.15■□□□□ 0.34
PTCD1-201ENST00000292478 PLEKHD1A6NEE1 506 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms