RNA–Protein interactions for RNA: ENST00000565224.5

SMG1-210, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5 BASIC

Gene SMG1, Length 2,372 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-210ENST00000565224 NISCHQ9Y2I1 1504 aa14.91□□□□□ -0.02
SMG1-210ENST00000565224 SHROOM4Q9ULL8 1493 aa12.7□□□□□ -0.38
SMG1-210ENST00000565224 CCDC180Q9P1Z9 1646 aa12.65□□□□□ -0.38
SMG1-210ENST00000565224 ZCCHC6Q5VYS8 1495 aaKnown RBP12.64□□□□□ -0.39
SMG1-210ENST00000565224 SUPT5HO00267 1087 aaKnown RBP12.49□□□□□ -0.41
SMG1-210ENST00000565224 ABCC9O60706 1549 aa12.44□□□□□ -0.42
SMG1-210ENST00000565224 DCAF8L2P0C7V8 631 aa12.27□□□□□ -0.45
SMG1-210ENST00000565224 DCAF1Q9Y4B6 1507 aa12.27□□□□□ -0.45
SMG1-210ENST00000565224 CHIC1Q5VXU3 224 aa12.21□□□□□ -0.46
SMG1-210ENST00000565224 MYO15BQ96JP2 1530 aa12.16□□□□□ -0.46
SMG1-210ENST00000565224 HRCP23327 699 aa11.96□□□□□ -0.5
SMG1-210ENST00000565224 NACADO15069 1562 aa11.89□□□□□ -0.51
SMG1-210ENST00000565224 RB1CC1Q8TDY2 1594 aa11.88□□□□□ -0.51
SMG1-210ENST00000565224 PCGF6Q9BYE7 350 aa11.87□□□□□ -0.51
SMG1-210ENST00000565224 SCRIBQ14160 1630 aa11.84□□□□□ -0.51
SMG1-210ENST00000565224 RSF1Q96T23 1441 aaPredicted RBP11.82□□□□□ -0.52
SMG1-210ENST00000565224 LOC105371045A0A1W2PR82 267 aa11.81□□□□□ -0.52
SMG1-210ENST00000565224 UNC13AQ9UPW8 1703 aa11.71□□□□□ -0.54
SMG1-210ENST00000565224 PABPN1Q86U42 306 aaKnown RBP eCLIP11.69□□□□□ -0.54
SMG1-210ENST00000565224 TRIM26Q12899 539 aaPredicted RBP11.67□□□□□ -0.54
SMG1-210ENST00000565224 TRIM41Q8WV44 630 aa11.65□□□□□ -0.54
SMG1-210ENST00000565224 PPARGC1BQ86YN6 1023 aaKnown RBP11.64□□□□□ -0.55
SMG1-210ENST00000565224 BICRAQ9NZM4 1560 aa11.64□□□□□ -0.55
SMG1-210ENST00000565224 CECR2Q9BXF3 1484 aa11.6□□□□□ -0.55
SMG1-210ENST00000565224 MROH2BQ7Z745 1585 aa11.57□□□□□ -0.56
SMG1-210ENST00000565224 FAM9AQ8IZU1 332 aaPredicted RBP11.53□□□□□ -0.56
SMG1-210ENST00000565224 WIZO95785 1651 aa11.5□□□□□ -0.57
SMG1-210ENST00000565224 DNAJC5BQ9UF47 199 aa11.48□□□□□ -0.57
SMG1-210ENST00000565224 ZEB1P37275 1124 aaPredicted RBP11.48□□□□□ -0.57
SMG1-210ENST00000565224 BAZ1AQ9NRL2 1556 aaPredicted RBP11.48□□□□□ -0.57
SMG1-210ENST00000565224 EIF4G1Q04637 1599 aaKnown RBP11.42□□□□□ -0.58
SMG1-210ENST00000565224 EHMT2Q96KQ7 1210 aa11.39□□□□□ -0.59
SMG1-210ENST00000565224 TOP2AP11388 1531 aaKnown RBP11.37□□□□□ -0.59
SMG1-210ENST00000565224 SMARCA4P51532 1647 aa11.33□□□□□ -0.59
SMG1-210ENST00000565224 CCDC88BA6NC98 1476 aa11.3□□□□□ -0.6
SMG1-210ENST00000565224 SMARCA2P51531 1590 aa11.29□□□□□ -0.6
SMG1-210ENST00000565224 ABCC8Q09428 1581 aa11.27□□□□□ -0.61
SMG1-210ENST00000565224 CC2D2AQ9P2K1 1620 aa11.23□□□□□ -0.61
SMG1-210ENST00000565224 WRNQ14191 1432 aaPredicted RBP eCLIP11.22□□□□□ -0.61
SMG1-210ENST00000565224 EEA1Q15075 1411 aa11.2□□□□□ -0.62
SMG1-210ENST00000565224 SOGA1O94964 1423 aa11.19□□□□□ -0.62
SMG1-210ENST00000565224 CEP162Q5TB80 1403 aa11.19□□□□□ -0.62
SMG1-210ENST00000565224 TNIKQ9UKE5 1360 aa11.18□□□□□ -0.62
SMG1-210ENST00000565224 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.16□□□□□ -0.62
SMG1-210ENST00000565224 CCER1Q8TC90 406 aaPredicted RBP11.15□□□□□ -0.62
SMG1-210ENST00000565224 CSRNP3Q8WYN3 585 aa11.14□□□□□ -0.63
SMG1-210ENST00000565224 PEG3Q9GZU2 1588 aa11.13□□□□□ -0.63
SMG1-210ENST00000565224 GOLGA3Q08378 1498 aa11.11□□□□□ -0.63
SMG1-210ENST00000565224 RUSC2Q8N2Y8 1516 aa11.11□□□□□ -0.63
SMG1-210ENST00000565224 UBTFP17480 764 aaKnown RBP11.09□□□□□ -0.63
SMG1-210ENST00000565224 ATAD2BQ9ULI0 1458 aa11.07□□□□□ -0.64
SMG1-210ENST00000565224 TTBK1Q5TCY1 1321 aaPredicted RBP11.06□□□□□ -0.64
SMG1-210ENST00000565224 CEP164Q9UPV0 1460 aa11.04□□□□□ -0.64
SMG1-210ENST00000565224 SYNJ1O43426 1573 aa11.03□□□□□ -0.64
SMG1-210ENST00000565224 NCAPD3P42695 1498 aa11.03□□□□□ -0.64
SMG1-210ENST00000565224 SCAF1Q9H7N4 1312 aaKnown RBP11.03□□□□□ -0.64
SMG1-210ENST00000565224 KIF21BO75037 1637 aa11.02□□□□□ -0.64
SMG1-210ENST00000565224 BAZ1BQ9UIG0 1483 aaKnown RBP11.01□□□□□ -0.65
SMG1-210ENST00000565224 CLIP1P30622 1438 aa10.97□□□□□ -0.65
SMG1-210ENST00000565224 DIEXFQ68CQ4 756 aaKnown RBP10.97□□□□□ -0.65
SMG1-210ENST00000565224 PELP1Q8IZL8 1130 aaKnown RBP10.95□□□□□ -0.66
SMG1-210ENST00000565224 HMGXB3Q12766 1538 aa10.94□□□□□ -0.66
SMG1-210ENST00000565224 VPS8Q8N3P4 1428 aa10.94□□□□□ -0.66
SMG1-210ENST00000565224 ACIN1Q9UKV3 1341 aaKnown RBP10.93□□□□□ -0.66
SMG1-210ENST00000565224 RAPGEF2Q9Y4G8 1499 aa10.92□□□□□ -0.66
SMG1-210ENST00000565224 TOP2BQ02880 1626 aa10.91□□□□□ -0.66
SMG1-210ENST00000565224 ZNF316A6NFI3 1004 aaPredicted RBP10.89□□□□□ -0.67
SMG1-210ENST00000565224 NEUROD1Q13562 356 aa10.89□□□□□ -0.67
SMG1-210ENST00000565224 CENPBP07199 599 aaPredicted RBP10.88□□□□□ -0.67
SMG1-210ENST00000565224 APLP2Q06481 763 aa10.88□□□□□ -0.67
SMG1-210ENST00000565224 BIVM-ERCC5R4GMW8 1640 aa10.87□□□□□ -0.67
SMG1-210ENST00000565224 HNRNPUL2Q1KMD3 747 aaKnown RBP10.87□□□□□ -0.67
SMG1-210ENST00000565224 ERICH3Q5RHP9 1530 aa10.84□□□□□ -0.67
SMG1-210ENST00000565224 NESP48681 1621 aa10.83□□□□□ -0.68
SMG1-210ENST00000565224 PRXQ9BXM0 1461 aa10.83□□□□□ -0.68
SMG1-210ENST00000565224 RANGAP1P46060 587 aaPredicted RBP10.81□□□□□ -0.68
SMG1-210ENST00000565224 GTF3C3Q9Y5Q9 886 aa10.79□□□□□ -0.68
SMG1-210ENST00000565224 ARAP1Q96P48 1450 aa10.78□□□□□ -0.68
SMG1-210ENST00000565224 CUX1P39880 1505 aa10.78□□□□□ -0.68
SMG1-210ENST00000565224 KIF27Q86VH2 1401 aa10.77□□□□□ -0.69
SMG1-210ENST00000565224 CFTRP13569 1480 aa10.75□□□□□ -0.69
SMG1-210ENST00000565224 CLSPNQ9HAW4 1339 aa10.74□□□□□ -0.69
SMG1-210ENST00000565224 CADPSQ9ULU8 1353 aa10.72□□□□□ -0.69
SMG1-210ENST00000565224 MIER1Q8N108 512 aa10.71□□□□□ -0.69
SMG1-210ENST00000565224 KANK4Q5T7N3 995 aaPredicted RBP10.7□□□□□ -0.7
SMG1-210ENST00000565224 DHX57Q6P158 1386 aaKnown RBP10.7□□□□□ -0.7
SMG1-210ENST00000565224 RRBP1Q9P2E9 1410 aaKnown RBP10.7□□□□□ -0.7
SMG1-210ENST00000565224 YTHDC1Q96MU7 727 aaKnown RBP10.69□□□□□ -0.7
SMG1-210ENST00000565224 MYT1Q01538 1121 aa10.68□□□□□ -0.7
SMG1-210ENST00000565224 ARHGAP35Q9NRY4 1499 aa10.68□□□□□ -0.7
SMG1-210ENST00000565224 LAMC3Q9Y6N6 1575 aa10.67□□□□□ -0.7
SMG1-210ENST00000565224 CUX2O14529 1486 aa10.65□□□□□ -0.7
SMG1-210ENST00000565224 CCNB3Q8WWL7 1395 aa10.64□□□□□ -0.71
SMG1-210ENST00000565224 ERCC6Q03468 1493 aa10.64□□□□□ -0.71
SMG1-210ENST00000565224 PRDM2Q13029 1718 aa10.63□□□□□ -0.71
SMG1-210ENST00000565224 KIF21AQ7Z4S6 1674 aa10.63□□□□□ -0.71
SMG1-210ENST00000565224 IGF1RP08069 1367 aa10.62□□□□□ -0.71
SMG1-210ENST00000565224 AEBP2Q6ZN18 517 aaPredicted RBP10.61□□□□□ -0.71
SMG1-210ENST00000565224 MAP3K1Q13233 1512 aa10.6□□□□□ -0.71
SMG1-210ENST00000565224 PDS5BQ9NTI5 1447 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms